Manihot esculenta (cassava): 110627208
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Entry
110627208 CDS
T05761
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110627208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110627208
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
110627208
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
110627208
DNA repair and recombination proteins [BR:
mesc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
110627208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
110627208
NCBI-ProteinID:
XP_021629183
LinkDB
All DBs
Position
11:complement(7112111..7117307)
Genome browser
AA seq
416 aa
AA seq
DB search
MPELPEVEAARRAIEEHCLSKRIKRAIIANDPKVIDGVSSADFEAALVGKTLISALRKGK
NLWFQLDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVNDTDEWPSKYSKLFIELDDGLEL
SFTDKRRFAKVRLLNDPASVPPISELGPDALLEPMEVDEIYESLRKKKIAIKALLLDQGF
ISGIGNWIADEVLYQARIHPLQTASSLSKESCATLLKCIKEVIEKALEVGADSSQFPNNW
IFHSREKKPGKAFVDGKKIDFINAGGRTTAYVPELQKLSGGQAVKVAAKSKRQTPKRKKG
EDDNDEGEDDASEPGSDKEEAARKAKSRRELKPRGHVKKPPAKQKSEATDDVDDEENDNC
AAADDDHDHDDYDDENDKDQKKKPRRVTNDKQAKAKTESSKKVTNQNTRKPKKKMK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctaccggaagtggaggccgccagaagggccatagaagagcactgcttaagc
aagaggatcaagagagctataatagccaatgatcctaaagtcattgatggagtctcttcc
gcggatttcgaggctgctcttgtgggaaaaactctaatttctgctcttcgcaagggcaag
aacctttggttccagctcgattcccctccctttccttcctttcagttcgggatggctggt
gctatatatattaagggagttgctgttaccaaatataaaaggtctgctgtgaatgacact
gatgaatggccatccaaatattcaaagctatttattgaactagatgatggtctggagctc
tcttttacagataagaggcgatttgctaaagtccgcctgctgaatgatccagcttctgtg
cctccaatttctgagcttggccctgatgccttattggagccaatggaagtcgatgaaatt
tatgaatccttgcgcaagaagaaaattgctatcaaggctctgttacttgatcagggtttt
atttcaggtattggcaactggattgcagatgaagtgctataccaagccagaattcatcca
ctacaaactgcttccagtttgtccaaagaaagttgtgcaacattacttaagtgcatcaag
gaggtcattgaaaaagcattagaagtaggggcagatagtagtcagttccccaataattgg
atttttcattccagagaaaagaagcctgggaaggcttttgttgatgggaagaaaattgat
ttcatcaatgctggtggtaggacaacggcctatgtaccggagttgcaaaagctgagtgga
gggcaagctgtgaaagtagcagcaaaatcaaaaaggcagactccaaagagaaaaaaaggt
gaggatgataatgatgaaggtgaagatgatgccagtgaaccaggaagtgacaaagaggaa
gctgctagaaaagctaaatcaaggagggagttgaagcctagaggtcatgtcaagaagcct
ccagcaaaacaaaaatccgaggcaacagatgacgttgatgatgaagaaaatgacaattgt
gctgctgcagatgacgatcatgatcatgatgactacgatgatgaaaatgacaaggatcaa
aagaagaaaccacgcagagtgaccaatgataaacaagctaaggcaaaaacagaatccagt
aagaaggttaccaatcaaaatactagaaagcctaagaagaaaatgaagtag
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