Manihot esculenta (cassava): 110627735
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Entry
110627735 CDS
T05761
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110627735
09123 Folding, sorting and degradation
03018 RNA degradation
110627735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110627735
03041 Spliceosome [BR:
mesc03041
]
110627735
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110627735
mRNA degradation factors
5'-3' decay
Lsm complex
110627735
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110627735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
110627735
NCBI-ProteinID:
XP_043818197
LinkDB
All DBs
Position
12:complement(3809041..3812930)
Genome browser
AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatccctctcagctccttccatcagagctaatagacaggtgcatagggtcg
aaaatctgggtgataatgaaaggagacaaggagctcgttggtactcttagaggcttcgat
gtctatgtcaacatggtcctcgaagacgttactgaatatgaaatcacagctgaaggacgg
cggattaccaagcttgatcagatattactaaatggaaataacattgccattttggttcct
ggtggttctcctgatccagaatga
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