KEGG   Manihot esculenta (cassava): 110627735
Entry
110627735         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110627735
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110627735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110627735
   03041 Spliceosome [BR:mesc03041]
    110627735
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110627735
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110627735
Spliceosome [BR:mesc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110627735
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 110627735
NCBI-ProteinID: XP_043818197
LinkDB
Position
12:complement(3809041..3812930)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggccaataatccctctcagctccttccatcagagctaatagacaggtgcatagggtcg
aaaatctgggtgataatgaaaggagacaaggagctcgttggtactcttagaggcttcgat
gtctatgtcaacatggtcctcgaagacgttactgaatatgaaatcacagctgaaggacgg
cggattaccaagcttgatcagatattactaaatggaaataacattgccattttggttcct
ggtggttctcctgatccagaatga

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