Manihot esculenta (cassava): 110627979
Help
Entry
110627979 CDS
T05761
Name
(RefSeq) rhamnogalacturonate lyase isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
110627979
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
110627979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
Peptidase_C97
DUF6348
Motif
Other DBs
NCBI-GeneID:
110627979
NCBI-ProteinID:
XP_021630096
LinkDB
All DBs
Position
12:32928609..32933761
Genome browser
AA seq
675 aa
AA seq
DB search
MGKMHLLVWSRWLEIVLCCFFFFIASYAKTPVRKNPRTTNNSSALGVQLRVTNHQRVIID
NGLVRVTFSSPGGDVVGIKYNGIDNVLEIINEDDNRGYWDVVWNRPGESNIYDKLQATDF
NVIMENEDQVEISFSKKWSPSMGKSTVPLNIDKRYIIRRGNSGLYLYTILERLEGWPDVD
MDQIRVVFKLQKEKFHFMAVSDDRQRVMPMPEDRLTGLPLAYPEAVLLTDPINPDLRGEV
DDKYQYSSKVKDNAVHGWISENPPVGFWMITPSNEFRVGGPFKQELTSHVGPTVLNMFTS
THYAGKDLNTAYRNGEPWKKVLGPVYVYLNSISASEDPEALWENAKEQMSTEVRSWPYSF
PQSEDFPTSYQRGNVLGQLIVRDRYMNERLMYANSAYVGLATPGDVGSWQMESKGYQFWT
QADRKGIFSINNVRAGNYSLYAWVPGIIGDYKYNFNIIIEPGSNIKLGVLIYDPPRNGPT
LWEIGIPDRTASEFYIPDTYPTLMNKLYTNHPTNKFRQYGLWERYADIYPKSDLIYNVGV
NNYDQDWFFAHVTREKGNKTYEPTTWQIIFELKSVNQSGNYTLQVALASATMSELQVRVN
TANSNRPLFTTGLIGRDNAIARHGIHGLYWLYSIQVPSSQLFQGNNIIYLTQSRSNGPFY
GIMYDYIRLEAPEET
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagatgcatttgcttgtctggtctcgctggctggaaatcgttctttgctgcttc
ttcttcttcattgcttcttacgcgaagaccccagttaggaaaaatccaaggacgaccaat
aacagctcagctcttggtgtacagctacgagtaaccaatcatcagcgagtgatcatcgat
aatggtcttgttcgagttactttttcgagtccaggcggtgatgtcgttggaattaaatat
aatggaattgataatgtactcgaaatcattaacgaagatgataatcgaggatattgggac
gttgtatggaatcgacccggagagtctaacatctatgacaagttacaagccacagatttt
aatgttataatggaaaatgaagaccaagtagagatttcattctctaaaaaatggagtcca
tctatgggtaaatctacagttcccttgaatatagataaaaggtatataattcgacgtggc
aattctgggctttatctgtatactattttggaacgattagaaggatggcctgatgttgat
atggatcaaattagagtggttttcaagctccaaaaagaaaagtttcacttcatggcagta
tctgatgataggcaaagggtaatgccaatgcctgaagatcgtcttactggtttgccttta
gcatatcctgaagctgttctcttaacagatccaatcaatccagatcttagaggagaggta
gatgataaataccaatattctagtaaagtcaaagataatgcagtgcatggctggatatca
gaaaatccaccggtgggattttggatgatcacacctagtaatgaatttcgcgttggtgga
cccttcaaacaagaattgacctctcatgtagggcctactgtcctgaatatgtttactagt
actcattatgctgggaaggacttaaacacagcgtatcgtaatggagagccatggaagaaa
gttcttggccccgtttatgtctatcttaattccatttcggcctctgaagatccagaagct
ctttgggaaaatgctaaagaacaaatgtcaactgaagttagaagctggccatatagtttt
cctcaatctgaagatttccccacttcttatcaacggggaaatgttttaggtcagttaata
gttcgtgacagatacatgaatgaaagattaatgtatgcaaattcagcttacgtgggattg
gcaacaccaggagatgtgggctcatggcaaatggaatcaaagggttatcaattttggacc
caagctgataggaaagggatcttctcaataaacaatgtgagagctgggaactatagttta
tatgcatgggttcctggtattattggagattacaaatataattttaatataatcattgaa
ccagggtctaatatcaaactgggtgttcttatatatgaccctccgagaaatggtccaact
ctttgggaaataggcattcctgatcgtactgcttctgaattctatataccggacacatac
ccaacactcatgaataaattatataccaatcacccaacaaacaaatttagacaatatgga
ttgtgggaaagatatgcagatatatatcctaaaagcgatcttatctacaatgttggtgtt
aataattatgatcaagattggttctttgcccatgttactagagagaaaggaaacaagaca
tatgaaccaaccacatggcagatcatatttgaacttaaaagtgtaaaccaaagtggaaat
tatacactccaagtggccttggcatcagctactatgtctgaactccaggtgcgggtgaac
actgccaatagcaatcggcctctttttacaacagggttaataggcagggataacgctatt
gcaagacatggaattcatgggttatattggttgtatagcattcaagtaccatcctcccaa
ctttttcaaggaaataatataatttatttgactcaatcgagaagtaatggccccttctat
ggtatcatgtatgattatattcgtttagaagcacccgaagaaacttga
DBGET
integrated database retrieval system
