Manihot esculenta (cassava): 110628050
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Entry
110628050 CDS
T05761
Name
(RefSeq) uncharacterized protein LOC110628050
KO
K19026
spatacsin
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110628050
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110628050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
110628050
NCBI-ProteinID:
XP_021630187
LinkDB
All DBs
Position
12:complement(35090146..35120560)
Genome browser
AA seq
3188 aa
AA seq
DB search
MDYFLGDETLPILQLHKWGASQCQLNLSEFREAFISPTRELLLLLSYQCEALLLPLVTES
PIDDNISESCLNECLQNQSPAAFGSHPSMEPSWSDSQDNISLADISVADLDNGFSGEHRF
LKSNNYPFICNVNSLAWGVCGDTYDAHEDVSFREFLFVTNDYGVTVHAFRVPDETALTRP
KLEGEFGQGRWVTWGPSTKYAQNRKSQDILDMYSEGGSTTVAVQKTKGNEETQQDTHKET
GVDHLSSGVASKRWLRSFFTKAKTIKFDGNIRTRFPEKTSFPGSAKVVSFSILDENLPVL
DFLSHENFLSNKGGSQDTLDARPYKCSRVFSSNSHCLVGFVLTLSDSLFAHTPKEIESSI
KALLLVARLDGLGIHWVSFVKLAESANVDPVSGWTDFGFSDNLLVCLNASGLIYFYAVMS
GECIAHMDVLQACGFDPKSRPLQQEKVATVDPQMKPVHKIHDMSTSQVGDSFGRRMFRKL
LVVSHTSLLAVVDECGIIYVICAGDYMPEKYYAYEKLLPHFQHLRLGTLVGWEVGGSDIG
YQMVYCNNSFKRKVDNFHGRGEKSDFFSSITSDNSFPDSEVHLQPMRHVFLPTERFSEDD
CICFSPLGITRLTKRHGIKNQPNVLIHLNLHMGLAVRDERCLDSGGKMFDLQGKEEASVG
EAIGCTFHGCLYLVNKVGLAVVLPSVSFSSNFLPVETFGYRLHSFDKGARYPVKRTHHIR
ESKELFSAWKVEVLDRVLTFEGPEEADRLCLENGWDLKISRMRRLQMALDYLKFDEIEQS
LKMLVDVSLAEEGILRLLFAAVYLMCNRNGSDIDVSAASRVLALATCFTTKMIRKFGLLQ
HKNGLLLGFRKTRFLSLPSVISDQVQSEMADSKRLCDMARFLEIIRNLQYRLGAKFKKPS
QGLIDGGEAINSVDSVLSEDEAQFSVFPENTVSLETVNQQELSISVSSVGSKGEKLALMS
KDALVSGADLDQDDSTAISIFVPQAGNLGKKNFPLENPKEMIARWKLENFDLKTVVKDAL
ISGRLPSAVLQLHLHRSRDLDTDEDPSDTFSEVRDIGRAIAYDLFLKGETGHAIATLQRL
GEDIETCLKQLLFGTVRRSIRIQVAEEVRKYGYLGPYEWKILEKISLIERLYPSSSFWKT
FIGRQKALMGAMLTLKSPGEIKLHLLCPHLFSNLTIECGEIDGVVLGPWTSIKEDYCDPV
VDEDTAHAGYWTAAAVWSSAWDQRTIDRIVLDQPFLMGVHVLWESQLEYYLGHNDWDEVF
KLMDLIPSSVVSHGSLQITLDGSKHAPDIGCSSEFPDYSNYICSIEEVDAVCIDVPGVKI
LRLSVDVMCTIWLRMLMEQELAKKYIFLKDYWEGTEDIVALLARSGFITSRPNRMSSEDY
SVKLSSDLNISDGGNFHVDTTQALDKLLVHHCVQYNLPNLLDLYLEHHKLARENDSLYLL
QEAAGDCQWARWLLLSRIKGHEYDASFCNARAIMSRDSNLSVLDIDEIIRTVDDIAEGAG
EMAALATLMYASIPIQNCLSSGTVSRLSSSTAQCTLENLRPTLQRFPTLWRTLVAASVGQ
DTSNLLVSRANNALSNYLCWRDNIFFSSARDTSLLQMLPCWFPKTVRRLIQLYIQGPLGW
QSFSGLPVGDSLLDREIDFYIHADEHTEISAVSWEATIQKHVQEELYDSSLEETGHGLEH
HLHRGRALAAFNHILGVRVQKLKLEGQSGAASHGQTNVQSDVQTLLAPLTQSEEAIVSSV
IPLAITHFEDPVLGASCAFLLELCGLSASMLRVDISALKRISSFHKLSENKEKYGQISPK
GTAFHLVSQEGGMVESLARSLADEYLRNDGVKEAKLKRTADLHTSKQPSRALMLVLQHLE
KASLPAMMDGKTCGSWLLTGSGDGAELRSRQKAASQHWNLVKIFCQMHQLPLSTKYLSVL
ARDNDWVGFLSEAQSGGYPFDTVVQVAAKEFSDPRLKIHILTVLKSMQSRKKAGSPSYLD
ATEKGSGTSCADESVLIPVELFRILADCEKQKNAGEALLTKAKEMSWSLLAMIASCFPDV
SPLSCLTIWLEITAARETSAIKVNDIASQIAENVGAAVLATNSLPVGNRAVTFHYKRQNP
KRRRLLEPISQDQLVLSAADVSSTYYRPNISVAHGVSGEEESKCGIGEHVNVSSDPDEGP
TSLSKMVAVLCEQHLFLPLLKAFEMFLPSCSLLPFIRALQAFSQMRLSEASAHLGSFSAR
IKDESSNFQSNMVREEQTATSWLSSTAVKAANSMLSTCPSPYEKRCLLQLLAATDFGDGG
CAATYYRQLFWKINLAEPLLRKDDGLHLGNETLDDASLLTALEKNGHWEQAINWARQLEA
SGGPWKSAVHHVVETQAESMVTEWKEFLWDVPEERVALWGHCQTLFIRYSFLPLQAGLFF
LKHAEEVEKDLPARELLELLLLSLQWLSGMITLSIPVYPINLLREIETRAWLLAVESEAQ
VKSDGDFTSTAASRDPVIGNTSNIIEKTANLITKMDVHINKMSRATDKHDAKESTSGFQK
NQVFDASNPTAGVSTKTKRRAKAFLPSRRPFMDSMDRSNDSEDVTIPLTSKNDLQLQDEN
LKLEISLSKWEERVGPAELERAVLSLLEFGQITAAKQLQHKLSPENSPPEFVLVDAALKL
AAISTPHHKVSPSMLDEEVHSVVQSYNIFTDQHMIDPLEVLESLANMFTEGSGRGLCKRI
IAFVKAANVLGLSFSEAFEKQPIELLQLLSLKAQESFEEASLLVQTHSMSAASIAQILAE
SFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLTWAELCPSQPEIGHALMRLVITGQEI
PHACEVELLILSHHFYKSSVCLDGVDVLVALAATRVDAYVAEGDFPCLARLITGVGNFHA
LNFILGILVENGQLDLLLQKYSAVADTNAGTGDTVRGFRMAVLTSLKHFNPKDLDAFAMV
YNHFDMKHETASLLESRAWQSAEQWFHRYDKDQNEDLLESMRYFIEAAEVHSSTDAGYKT
CRTCAQASLISLQIRMPDVRWLCLSETNARRLLVEQSRFLEALIVAEAYGLNQPSEWALV
LWNQMLKPELTEEFVAEFVAVLPLQPSMLNELARFYRAEVAARGDQSQFSVWLTGGGLPA
EWAKYLGRSFRCLLKRTRDLRLKLQLAMVATGFNDVVDACSKALDKVPETAGPLVLRKGH
GGAYLPLM
NT seq
9567 nt
NT seq
+upstream
nt +downstream
nt
atggattactttctcggtgacgagactctgcctatcctgcagttgcataaatggggcgcc
tctcagtgccaactaaacttatcagaatttcgtgaagcttttatttcaccaactagggag
ctgctcttattgctgtcttaccagtgtgaagcgttgctgcttcctttggttactgagagc
cccatagatgacaacatttcagaaagttgcctcaatgaatgtctgcaaaatcaatctcca
gcagcttttggttctcatccatcaatggagccaagttggtcagattcacaagataatata
tctcttgctgatatatcagtagcagatttagataatggtttttccggcgaacatagattt
ttgaaatctaataattatccttttatttgtaatgtgaattcactggcttggggtgtttgt
ggggatacctatgatgcacacgaggatgtttcatttagagagtttctttttgtgaccaat
gattatggtgttacagtgcatgctttccgagtgcctgatgaaactgcattgacaagacct
aaattggagggtgagtttgggcaagggaggtgggtgacttggggtccttcaaccaaatat
gctcaaaataggaaatctcaggacattcttgatatgtattctgaaggcggtagtactact
gttgctgtccaaaagaccaaaggaaatgaggaaactcaacaagatacacataaagaaact
ggggttgaccatctgtcaagtggtgttgcttcaaagaggtggctgcgttcattttttact
aaagccaaaactataaaatttgatggtaacattaggactaggttcccagagaagacatca
tttccgggctcagcgaaggttgtttcgtttagcattcttgacgagaatttaccagttttg
gacttcctttctcatgaaaactttctatcaaataagggaggaagccaagacactttggat
gcccgtccatacaaatgttccagagtgttttctagcaattcacattgtctagttggattt
gttttaacattgtcagattctttatttgcccatacaccaaaagagattgaaagcagcata
aaagctttgcttcttgttgctaggttagatggtttgggaatccattgggtttcctttgtg
aagcttgctgaaagtgcaaatgtagaccctgttagtgggtggactgactttggcttttct
gataatcttcttgtttgcctaaatgcttctgggttaatctatttttatgctgtaatgtct
ggagagtgcattgcacatatggatgttttacaagcttgtggatttgacccaaaatcaagg
ccattgcagcaagaaaaagttgccacggttgatccacagatgaaacctgttcataaaatt
catgatatgtcaacttctcaagttggtgattcatttggtagaagaatgtttagaaagttg
cttgttgtttcacacacttccttgctagctgttgtcgatgaatgtggtattatttatgtc
atttgtgctggtgactatatgccagagaagtactatgcatatgagaaattgcttccacat
tttcaacatttaaggcttggcacattggttggttgggaggttggtggttctgatataggc
taccaaatggtgtactgtaataattcatttaagaggaaagtagataactttcatggtaga
ggggagaagagtgacttcttttcaagcatcacatcagataatagttttcctgattctgag
gtgcatttacaaccaatgcgtcatgtttttcttcccacagaaagatttagtgaggatgat
tgtatctgtttttcacctttgggaatcactcggcttaccaagaggcacggcattaagaat
caaccgaatgttctcattcatttaaatctgcatatgggtttagctgttcgtgatgaaaga
tgcttggattctgggggaaaaatgtttgacctgcaagggaaggaagaagcttctgttgga
gaagcaattggttgcacatttcatggatgtctttatcttgtgaacaaagttggccttgca
gttgttcttccctctgtttctttttcatctaatttcctgcctgttgaaacttttggatat
cggctacacagttttgataaaggcgccagatatcctgtgaaaagaactcatcatataagg
gaatccaaagagcttttctcagcttggaaagttgaagttttggatagagttcttacgttt
gaaggccctgaagaggcagatcgtttgtgtttggaaaatggctgggatttaaaaatatct
aggatgcgtcggctacagatggcattggactacctgaaatttgatgagatagagcaatct
ctaaaaatgcttgtggacgtcagtctggcagaagaaggcattttgagattgctctttgct
gctgtttatctgatgtgtaacagaaatggcagtgacattgacgtttctgctgcatcaagg
gttcttgcattggccacttgcttcacaaccaagatgattagaaaatttgggttactgcaa
cataaaaatggcttgctacttggttttaggaagacccgatttctctctcttccttcagtt
atatcagatcaagtacaaagtgaaatggcggactcaaaaaggctttgtgatatggctcgt
tttttggagatcattaggaatctgcaatatcgacttggagcaaaattcaaaaagcctagc
cagggattgatagatggtggtgaagcgataaattcggtggactcagttttgtcagaggat
gaagctcagttttcagtttttccagaaaatactgtttccttggagacggtaaaccaacaa
gaactttcaatttctgtatcttctgtgggttccaagggcgaaaaacttgctttgatgtcc
aaggatgcattggtttctggtgctgatttggatcaagatgactcaactgcaatatctata
tttgtgcctcaagctggaaatttgggaaagaaaaactttccattggaaaatcccaaggag
atgattgcccgatggaaattagaaaattttgatcttaaaactgtagttaaagatgctctc
atctctggccgacttccatcagctgttcttcaattacatcttcatcgttcaagagatttg
gacactgatgaagatccttctgatacctttagtgaagttcgtgacattggaagagccatt
gcttatgacctatttctgaagggtgaaactggacatgcaattgcaacattacaaaggctc
ggagaagacattgaaacctgcctcaagcagttattatttggcactgtaaggagatctatt
cggattcaagttgcagaagaggtgagaaaatatggttacctgggaccatatgagtggaag
atattggagaagatatcattaatagagaggctgtaccctagcagtagtttctggaaaact
tttattggtcggcagaaggcattgatgggtgctatgttgactttaaagtcacctggagaa
attaagctgcacttattatgtccacatttatttagcaatcttaccattgaatgtggtgag
attgatggtgttgttctaggtccatggacaagcatcaaggaagattattgtgaccctgtg
gttgatgaagatactgctcatgccggatattggactgctgcagcagtgtggtctagtgcc
tgggatcagaggaccattgatcgtatagttctggatcaacctttcctcatgggtgttcat
gtattgtgggagtctcaactggaatattatttgggccataatgactgggatgaagttttt
aaacttatggatctcattccttcatctgtagtatcacatggaagcctccagatcacttta
gatggctcaaaacatgcacctgatattggatgcagcagtgaatttccagactacagtaat
tatatatgctccattgaagaagtggatgctgtttgcattgatgttccaggagtcaaaata
ttaaggctttctgttgatgttatgtgcaccatctggttaaggatgctcatggaacaggag
cttgctaagaaatatatttttttgaaggattattgggaaggcactgaagatattgtagct
ctactagctcgttcaggcttcatcactagcaggcctaatagaatgtcatcagaggattat
tctgtgaaactttcatctgatctgaatatatcagatggtggaaactttcatgttgataca
acacaagctttggataaattactggtgcatcattgtgtgcaatataacttgccaaacctt
ttggacctttatcttgaacatcacaaattggccagggagaatgattcactttacttgtta
caggaagctgcaggagattgccaatgggcaagatggttgcttctatctagaatcaaaggc
catgaatatgatgcatcattttgtaatgctcgggctataatgtctcgtgatagcaacctc
agtgttctggacatcgatgagataattcgtactgttgatgatattgctgaaggagcaggt
gaaatggcagctttagcaactctgatgtatgcctctattccaattcaaaattgcttaagt
agtggcactgtttcaaggcttagtagctccacagctcaatgcacattggaaaaccttagg
cccactttgcaacgctttcctacattgtggcgcacacttgtagcagcaagtgttggacaa
gatacatcaaatttattggtttctagggcaaataatgcactgtcaaactatttgtgttgg
cgcgacaatatcttcttctcttctgcacgtgatacttcacttctacaaatgctgccatgc
tggtttcccaaaactgtccggaggttaattcagctttatatccagggtccgcttggatgg
caatcattctcaggtctgcctgtaggggattctctgttagatagagaaattgacttttac
atacacgctgatgaacatactgagataagtgctgtatcctgggaagcaacaatacaaaag
catgtccaagaggaactgtatgactcctcacttgaggaaactggacatgggcttgagcac
catttgcatcgtggtcgtgcgctggcagcttttaatcatattcttggggttagagttcaa
aagttgaaattggaaggccaatctggtgctgcatcacatggacaaacaaatgtgcaatca
gatgtgcaaacacttctagcacctttaacacagagtgaagaggctattgtttcatctgtg
atcccacttgctattactcattttgaggatcctgtattgggggcatcgtgtgcttttctc
ctcgagctttgtggcttatctgcaagcatgcttcgggtggatatttctgccttgaagcgg
atatcatcatttcataaactaagtgaaaacaaagaaaaatatggtcaaatttcacctaaa
ggcactgcttttcatttggtttctcaagaaggtggcatggtagagtctctagctagatca
ctagcggatgaatatttacggaatgatggtgtaaaggaagctaagctaaagaggactgca
gatttgcatacgagcaaacaaccctcacgagctctcatgctagtcttacagcatttggaa
aaggcaagccttccagcgatgatggacggaaagacctgtggatcttggcttctaactggt
agtggcgatggggctgaattaagatctcgccaaaaagctgcaagtcagcattggaattta
gttaaaattttctgccagatgcatcagcttcccttgagcacaaaatacctttctgtattg
gcaagagataatgattgggttggatttttgtctgaagctcagagtggaggataccctttt
gatacagtggtccaagtggcagccaaggaatttagtgatccacgtctcaaaattcatatt
ttaactgtcttgaaaagcatgcagtcaagaaagaaagctgggtctccttcttacttggat
gccactgaaaaagggagtggaacttcctgtgcagatgagagtgtactcatacctgttgaa
ctctttagaattttagcagattgtgagaagcagaaaaatgctggagaagccctcttgacg
aaagcaaaagagatgtcctggtcacttttggcaatgattgcatcatgctttccagatgtg
tctccattatcttgcctaacaatttggctagaaattacggcagcaagggaaacttcagcc
atcaaggtgaatgatattgcatcccagattgctgaaaatgttggagcagctgtgctagct
actaattctctgccagtgggtaacagagcagtaacatttcattacaaaaggcagaatcca
aaacgtcgacgccttttggagcccatatctcaggaccaattggttttatctgctgctgat
gtttcaagtacttattatcgtccaaatatatctgtggcacatggtgtatctggtgaagag
gaaagcaaatgtggaattggtgaacatgttaatgtttcaagtgatcctgatgaagggcca
acatctctttcaaagatggtggcagtgctttgtgaacagcacttgtttctgccattgtta
aaggcttttgaaatgtttcttccttcgtgttctttgctgcctttcattcgtgcacttcag
gcattttcacaaatgcgcctatctgaagcttcagcacatttgggctccttttctgccagg
ataaaggatgaatcatccaatttccagtcaaatatggtaagagaagagcagactgccaca
tcatggttaagctctactgctgtaaaagctgccaattccatgctttcaacctgcccatct
ccttatgaaaaaagatgcttgctacaacttcttgctgcaactgacttcggtgatggagga
tgtgcagcaacatattatcgacaacttttttggaaaattaacttagcagagcctttatta
aggaaggatgatggtctacatcttggcaatgagacattagatgatgcttcacttttaact
gctctagaaaagaatggacattgggagcaagcaatcaactgggccaggcagttggaggcc
agtggtggaccttggaaatcggctgttcaccatgttgttgaaactcaggctgaatccatg
gtgactgaatggaaggagttcctttgggatgttcccgaagagagagttgctttgtggggt
cattgtcagacactgttcattagatactcttttctccctctacaggctggattatttttc
cttaaacatgctgaggaggtggagaaagatcttccggccagggagcttcttgagttgctg
ctgctttctcttcaatggttaagtgggatgataactctgtccattccggtttatccgata
aatctcctgcgagaaattgagactagagcatggctgttggctgtagaatcagaagctcag
gtaaagagtgatggagacttcacatcaacagctgccagccgggatcctgtgattggaaat
acttctaatatcattgaaaagactgcaaatttaataacgaagatggacgttcatataaat
aaaatgagtagagcaacagataagcatgatgcaaaggagagtacctcaggatttcagaag
aatcaagtatttgatgccagcaatccaacagcaggggtcagtacaaagacaaagcggagg
gccaaagcctttttgccttcaagaaggccatttatggattcaatggatagaagcaatgat
tctgaagatgttactattcctctcacttctaagaatgacttacagttgcaagatgaaaac
ctaaagttggaaatttctttatcaaaatgggaggaaagagttgggcctgcagagctggaa
agagctgttctttctttactggagtttggacaaataacagctgccaagcaactccaacat
aaactatctccagaaaattcacctccggaatttgttctggtagatgctgcgctaaagctt
gcagctatttcaactcctcatcacaaagtatctccatcaatgcttgatgaggaagtgcat
tctgttgtccaatcatataatatcttcactgatcagcatatgattgacccattagaggtg
ttggagagtttagcgaacatgtttactgagggtagtggacgtggtctatgtaagagaatc
atagcatttgtaaaagctgcaaatgttctgggtctctctttttcagaggcatttgagaag
caaccaatcgaattgttacagttgctttctcttaaagcacaagagtcatttgaagaagca
tctctcttagtgcaaactcattccatgtcagcagctagtattgctcaaattcttgccgaa
tcatttttaaagggtctactggctgcgcatcgcgggggatatatggattctcagaaggaa
gaaggacctgctcctctgttgtggagattctcagacttcttaacatgggcagagctttgc
ccttcacaacctgaaattggccatgcattaatgcgtttggtgattacaggacaagaaata
ccacatgcatgtgaggttgagcttcttattctttctcaccacttctacaaatcatcagta
tgccttgatggagttgatgtgttggtagctcttgctgcaactagggttgatgcctatgta
gctgagggggattttccatgtttggctcgattaataactggagttgggaacttccatgcc
cttaatttcattcttggaattctcgtagaaaatggtcagctggatcttctccttcagaag
tattctgctgttgcagacacaaatgcaggaactggtgatactgtcagaggatttcggatg
gctgttttgacatcattgaagcatttcaacccaaaagatcttgatgcgtttgctatggtc
tataaccacttcgacatgaagcatgaaacggcttcacttttagagtcacgagcatggcag
tctgcagaacagtggtttcaccgctatgacaaggaccagaatgaggatctgcttgaatca
atgcggtatttcattgaagcagctgaagttcattcttccactgatgctggctataaaacg
tgcagaacttgtgctcaggcttcccttatttcccttcaaattcgaatgccagatgtcagg
tggctctgtttatctgaaaccaatgccagacggttactagtagagcaatcccgtttccta
gaggcactaattgttgctgaagcctatggtcttaaccagccaagtgagtgggcgttggta
ctttggaatcaaatgctaaagccagagctaacagaagaatttgtggctgaatttgtggcg
gtgcttccgctccaaccttcaatgcttaatgaactggcaagattctatagggctgaggtg
gcggccagaggggaccaatcacaattctcggtttggctgactggtggaggattacctgca
gaatgggctaaatatttgggaagatcattcagatgcttgttgaagagaactagggatctg
aggttaaagttgcagctggctatggtagcaaccggttttaatgatgtcgttgatgcatgc
tcaaaagcactagacaaggttcccgaaactgctggacctctggtactgaggaaagggcat
ggtggtgcctacctcccattgatgtga
DBGET
integrated database retrieval system
