Manihot esculenta (cassava): 110628107
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Entry
110628107 CDS
T05761
Name
(RefSeq) YTH domain-containing protein ECT2 isoform X1
KO
K20102
YTH domain-containing family protein
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110628107
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110628107
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Gene cluster
GFIT
Motif
Pfam:
YTH
DUF3942
Motif
Other DBs
NCBI-GeneID:
110628107
NCBI-ProteinID:
XP_021630294
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Position
12:1066228..1071186
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AA seq
602 aa
AA seq
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MSKDQPAVDENGVDSLRAATTVGSLRVDASPYACSSQTQSVYHGGNGNMLGTWGECLPDV
NAEGLEIGSYGIYNDPSSNPFRGLGYTPQMPQRPFASITMTTPPGNCRGQLYNGQDLPNS
ETPFYQQFMTANTASQTPVSSAMLPVTINPQEDGNRFGPQPGYQPAKGSVLRESNFSGDS
RGFKFLQQGYDGFESSGLWSDWSKPGNAMGSLLHLSSPTAVPKPIISLGFSANHFGVVSQ
RKESLFGFGSRLGPSYKIYPQGQTNGNSSSHISSSMFGMNGQIWSTPHEARQGRRCNDLS
CSCNVALDTLGERNRGPRAFKPRSKTAPNGSVIDNHRNAVSDFCKESYNGLDFFTEYKDA
KFFVIKSYSEDNVHKSIKYGVWASTLNGNKKLDGAYHEAKERHGTSPVFLLFSVNASAQF
CGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSR
DTQEVELEHGVEMLKILKNYESHSSILDDFHFYEERQKAMQARKSRQHQQAIPAPTSVVG
DGEQNSISISNDFMKKISKSFAESLSLKETETKFSIPHLPQGSMGIQHGKRSRQKQHIQA
NR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggatcagcctgccgtagatgaaaacggggttgattctttgcgggctgctact
actgttggttctttgagggttgatgcttcaccctatgcttgttcctctcagacacagtca
gtctaccatggaggtaatggaaatatgctaggcacatggggtgaatgtctcccagatgtt
aatgctgaaggcttggaaattggttcttatggtatctacaatgatccttcatcaaaccca
tttcgtggccttgggtacactcctcaaatgccacaaaggccatttgcctcaatcacaatg
acaacccctcctggcaattgtcgtggccagctgtacaatggccaagatttaccaaattca
gaaacacctttctaccaacaattcatgacagcaaacactgcttcacaaaccccagtttct
tctgctatgttgccagttaccattaatccccaagaagatggcaacagatttgggcctcaa
ccaggttatcagcctgcaaagggatctgttttaagagaaagtaatttttcaggagattcc
agaggctttaagtttttgcagcaaggatatgatgggtttgaaagcagtgggttgtggtca
gattggtcaaaacctgggaatgcgatgggttctctgctgcatttgtcatcaccaacagct
gttccaaaaccaataatttcactaggtttttctgcaaatcattttggagtggtttcacaa
agaaaagaatcattgtttgggtttggctctcgtttaggccccagttataaaatctatcct
caaggtcaaactaatggaaactctagctctcatatttcctcttctatgtttggaatgaat
ggtcagatctggtccacacctcatgaagctagacaggggagaaggtgcaatgacctttca
tgcagttgtaatgttgcacttgatacattaggcgagcgaaatagaggacctagagcattt
aagccaagaagtaagacagcaccaaatgggtctgtgattgataatcacaggaatgcagtt
tctgatttttgtaaagagtcttacaatggcctggattttttcactgaatacaaggatgcc
aagttctttgttataaaatcttacagtgaagataatgttcataagagcataaagtatggt
gtctgggcgagtaccctgaacggcaacaagaaattagatggtgcttatcatgaggcaaag
gagagacatgggacaagtccagtttttctgttgttttcggtgaatgctagtgctcagttt
tgtggagtggctgagatggttggacctgtggactttgacaagagtgtagattactggcaa
caggataagtggtctggacagtttcctgtcaagtggcacattattaaagatgttcctaac
agtcaatttcgtcatattgtgcttgaaaataatgacaacaagccagtcactaacagtaga
gatactcaagaggtggaactggaacatggtgttgaaatgttaaagatattgaagaactat
gaaagccattcatccatcctagatgattttcatttttatgaagagaggcaaaaagcaatg
caggcaaggaagtcaagacagcatcagcaagctattccggcgcctacttcagtggttgga
gatggtgaacaaaattctatttcaatatctaacgacttcatgaagaaaatttccaagagc
ttcgctgaatctctttctctgaaagagaccgaaacaaagttttctattccacatctgcct
caggggtccatgggaattcaacatggaaaaagaagtcgacagaaacagcacatccaagct
aatcggtag
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