Manihot esculenta (cassava): 110628219
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Entry
110628219 CDS
T05761
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110628219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110628219
Spliceosome [BR:
mesc03041
]
Complex C
Other components
Step II factors
110628219
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
DUF5672
PAN2_N
Motif
Other DBs
NCBI-GeneID:
110628219
NCBI-ProteinID:
XP_021630459
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All DBs
Position
12:2540912..2544946
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AA seq
585 aa
AA seq
DB search
MDLLQSYKGDDELDGREVQNPISSPDSSPPRLLPAKSAAPKVDDTMLALTVAQANQTISK
PIDPVHHVVAFNPKYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDAAIDSFVFDEQY
NTFHKYGYAADPSASEGNNYVGDLDALKKNDGISVYNIPQHEQKRRKIEKKKETEENEGE
NEDMDVDRVEIDNPASDAWLLKNRKSPWAGKKEGLQTELTEEQKKYAEEYAKKKEEKGAG
GEKGEIVADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAI
RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDK
NIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEY
DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAVHPNTN
WFAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF
WDWKSCKVFRTLKCHEGVSIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcttcaaagttataaaggcgatgacgaattggatggacgtgaagtccagaac
cctatttcttcaccggattcatctcctccacgcctccttccagccaaatctgccgccccg
aaagtcgacgatacgatgctagccctaacggtagcgcaggccaaccagaccatctctaag
cccattgatcctgtgcaccatgtcgtcgcgtttaaccctaagtacgatcagctctgggct
cccatctacggccctgcacatccctacgccaaggacggtatcgcccagggcatgcgcaac
cacaagcttggcttcgtcgaggacgccgccatcgactcgttcgttttcgatgagcagtac
aacaccttccacaagtatggttacgccgctgacccttcggcttccgaaggtaataattat
gtcggcgatttggatgctttaaagaaaaatgatggcatatcggtttataatataccgcag
catgagcagaagaggcgaaaaattgaaaagaagaaggaaaccgaggagaatgagggtgag
aacgaggacatggatgtagatagggtagagatcgataatccggctagtgatgcatggttg
ttgaagaatagaaagagcccatgggcaggcaagaaggaaggtttgcaaacggaattgaca
gaagagcagaagaagtacgcagaggagtacgctaagaagaaagaagagaaaggagctgga
ggtgaaaaaggagagattgttgctgataagagcacttttcacggcaaagaagagagggat
tatcagggaagatcctggattgcgccgcccaaagatgctaaagctactaatgatcattgt
tatataccaaagagacttgtgcatacatggagcgggcatacaaagggagtttctgcaata
aggtttttccccaaatatgggcatttgattctttcggcaggaatggataccaaggtgaag
atatgggatgtgttcaattcgggtaagtgtatgagaacttatatgggtcattcaaaggct
gttagagatatttcgttttgtaatgatgggactaagtttttgactgctggatatgataaa
aatattaagtattgggatacagagactgggcaggttatctcaactttttccacagggaag
atcccttatgttgttaagcttaaccctgatgatgataagcagaatattctgttggcgggt
atgagtgataagaaaattgttcagtgggatatgaatactggccagatcactcaggagtac
gatcaacatttgggggcagtaaataccattacttttgtggataataataggagatttgtt
acctctagcgatgataaatcacttcgtgtatgggaatttgggatccctgttgttattaag
tatataagtgaaccacacatgcattctatgccgtcaattgctgttcatcccaacacaaat
tggtttgcagctcagagtttggataaccagattctcatttacagtaccagggaaagattt
cagttgaataagaaaaagagatttgccggacatattgtggcaggttatgcttgtcaagtc
aatttttctccagatggacggtttgttatgtcaggagatggtgagggtaagtgctggttt
tgggactggaagagttgcaaagttttcaggactctcaagtgtcatgagggagtgagcatt
gggtgtgagtggcatccactggagcaaagtaaagttgcaacttgcggttgggatggcctg
attaagtactgggactaa
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