Manihot esculenta (cassava): 110628258
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Entry
110628258 CDS
T05761
Name
(RefSeq) sister chromatid cohesion 1 protein 4 isoform X1
KO
K06670
cohesin complex subunit SCC1
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110628258
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
110628258
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Gene cluster
GFIT
Motif
Pfam:
Rad21_Rec8_N
Rad21_Rec8
CNDH2_N
Motif
Other DBs
NCBI-GeneID:
110628258
NCBI-ProteinID:
XP_021630521
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Position
12:332629..345402
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AA seq
1265 aa
AA seq
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MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGISVDSILFPEVPIALRLSSHLL
LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
LPDNDIFQGNYIDHHVSTREQITLQDTMDGVVYSTSQFGLDERFGDGDTTQVGLDLEEDL
FLDKVAARKHDEISENDAQTSVESMPHPKVERSHEGMAGSSKDMPFNGSREKIEGLAANL
EGIDSAQAPSTPGLMEEPNVSSVKEVLACDDHLESEDHNLRRFLGIESSENAYNKSDLHD
RDGAIDLSLGDNSNHNSVVCLPTGESSHPSGDLEVNQTALKGDLLSTSVTTEHISSDWTV
SGLDGLDMVEDASRVVSCNNEETVPSVDRMNGECEESTSIRLRETNDGEIFKNMEDSHSN
EKTVVSNVVHLLGSPSAPNSVNVEGQGCQGLEDPKALNDSDYNERMPPACTGVLWTCNAH
LNEPDTLSCDVRNSAITSDLQSAGIVLLSTESLQGEEEFHASGTSTKVQGQECHVIDVVQ
SEEKWISEPTLSGEIQADGEKQEEQLDNAISNNQCSDLNSSMTSDLPAPEKLLFAPQRLL
NSPHDLLVETPDKEVRGEGDESGAQIETSGKKRGFAESCLTVQSIKSVESFDMTRSKRAV
DSVPDDDDLLSSILVGRRSSVLKMKPTPPIPEVRSVKRVRSSSRSTALKRKVLMDDSMVL
HGDTIRQQLTNTEDIRRMRKKAPCTRTEILIIQRQSLEEEIFCEPVLTGILPELTHLNGE
AFDLSRIRISENDDINNNAFLEALSDEDSAKQNVILHNEIEGSTEPGSCRSNLDGQSSET
PIQNDNHQRPGLIGSNDFVNKEHINGITDSAGYRTSEHEYMGEISEIVTDNVNAIVVDAG
THDSAQGLITCQSEPVPRDTFEMATGTVDRSDIMDKMFAADDFVQMEASNLPSDKIDTRL
VEEVISLRDMGIDRGFDGVEVLDHSAEQIVAIGTELGAEGIPLDESKVGTSMEVGDFLAE
GSAHIDEADSSLAKVPSETGGCISFSLVNVDQALDEIGNDKNGTRSEDGGLAVTSGCIDV
KDQISNHLCNDESEMDSACMIGPDGDFKSTSMNGDDTVCQQIDHQSAMDTQNTPLDHVTT
ACDDFQDTAFANNTEFLNVDGDEMGEDDEEGMPNAEDTRLLENSGWSSRTRAVAKYLQTL
FDKKAGHGKVLSMDNLLAGKTRKEASRMFFETLVLATRDYVHVEQAKPFDNINIKPRAKL
VESDF
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgttttattcacagtttatattggccaagaaagggcctttggggacgatatggatagcg
gctcatttagagagaaagcttcgaaagaaccaggttgcggacactgatattggtatctct
gtagattccattctttttcctgaagtaccaattgcacttaggttgtccagtcatcttctt
cttggtgtggtgaggatatattctagaaaggtgaactacctttttgatgactgcagtgag
gctttgctgaagataaagcaggcttttcgctctactgcagttgatttacctcctgaagaa
tcaactgctccatatcactccattacattgccagagacttttgatcttgatgattttgag
ctgccagataatgatatttttcaaggcaactacattgaccatcatgtcagtactagggag
cagattactctgcaagacaccatggatggtgttgtttactccacatcacagtttggattg
gatgagcgttttggtgatggtgacactactcaagttggtttggaccttgaagaggatctc
ttcttagataaggttgcagcaagaaaacatgatgaaatttctgaaaatgatgctcaaaca
tctgttgaatcaatgccacatccaaaagtggaaaggagtcacgaagggatggctggatct
tcaaaagacatgccatttaatggtagtagagaaaagattgaaggtcttgctgcaaatttg
gaaggcattgactctgcgcaggctccatctacccctggattgatggaagagccaaatgta
tcaagtgtcaaggaagttctggcatgtgatgatcacttagaatcagaagatcataattta
agaagatttttaggaatagagagctctgaaaatgcatacaataagtcagatcttcatgat
agggatggtgctatagatttgtctctaggtgataattcaaatcataattctgttgtgtgt
cttcctactggggagagcagccatccttctggcgacttggaggtcaatcaaacagcatta
aagggagatttactttctacttcagtgactacagaacatatttcatcagattggactgtt
agtggactggatgggttggacatggtagaagatgcaagtagagttgtttcatgcaataat
gaagagactgtaccctctgtagatcgaatgaatggggagtgtgaagaatccacatcaatt
aggttgcgagaaactaatgatggtgaaatcttcaagaacatggaagattcacactcaaat
gagaaaactgtagtgtcaaatgtcgtccatttactgggatcacctagtgctccaaactct
gttaatgttgaaggtcagggttgtcagggattggaggatcctaaagcactgaatgacagt
gattataatgaacggatgccacctgcttgcacaggtgtgctctggacatgcaatgcccat
ttgaatgagcctgatacattatcttgtgatgttcgtaattctgcgattacttctgacttg
caatcagcaggcattgtactgctatcaacagagtcacttcaaggggaggaagaattccat
gcttcaggaacttccactaaggtgcaaggtcaagaatgccatgtgattgatgttgtgcaa
tcagaggaaaagtggatttctgagcccactttaagtggagaaattcaggcagatggagaa
aagcaagaggagcaactggacaatgcaatctctaataatcagtgttcggatttgaatagc
tccatgacttctgacttgcctgcacctgaaaagttgctttttgcaccccagaggcttctg
aatagcccacatgatttactagttgagacacctgacaaagaagtaagaggcgagggtgat
gaaagtggtgcgcaaattgaaacatctggtaaaaagcgtggttttgctgaaagttgcctc
acggtgcaaagtataaagtcagtggaatcatttgacatgaccagatcaaagagagctgta
gattctgttcctgatgatgatgacttgctctcttctatattagttggaagaagatcttca
gttttgaaaatgaagcccactccacccatacctgaagtacgatcagtgaagcgtgtccgt
tcttcttctcgatctactgcattgaagagaaaggttctcatggatgattcaatggttttg
catggcgatactatacgtcaacaattgaccaacacagaggacatacgtagaatgcgtaag
aaagcaccttgtacacgtactgaaattttgataattcagaggcaatccttggaggaggag
atcttctgtgaaccagtattaactggcatattaccggaactgacacatttgaacggtgaa
gcatttgatttgagccgaatcaggatttctgaaaatgatgacattaataataatgctttt
ctggaagcattgagtgatgaagattctgccaagcaaaatgttatcctacataatgaaatt
gaaggttccacagaacctggtagttgcagaagtaacttggatggacaatcctctgagact
cccattcagaatgataatcaccagcgtcctggcctcattggctccaatgattttgttaat
aaagagcacataaatggtatcactgattcagctggttacagaacttccgaacatgaatat
atgggagaaattagtgaaatagtaactgataacgtgaatgctatagttgttgatgccggc
acacatgattctgctcaggggttgatcacatgccaaagtgagccagtgcctagagatact
tttgaaatggcaactggtacagttgatcggtcagatataatggacaaaatgtttgccgct
gatgattttgtgcagatggaagcttcaaacctaccatctgataagattgatacacgtctg
gtggaggaagttatttctttaagggacatgggcattgacagaggttttgatggtgttgaa
gtgctagaccattctgcagagcaaattgttgcaattggaactgaattgggggcagaagga
ataccgctggatgaaagcaaagttggtacatcaatggaagtaggagatttcctggcagaa
ggttctgcacatattgatgaagcagatagttctcttgctaaggtaccttctgaaactggt
ggatgcattagctttagtttagtaaatgtggaccaagctttggacgagattggaaatgat
aagaatgggactcgtagcgaagatggaggcttagctgtgacatcagggtgcattgatgtt
aaggaccaaatctctaatcatttgtgtaatgacgaatctgaaatggattctgcatgcatg
ataggacctgatggggatttcaaaagcacttccatgaatggagatgatacagtatgtcaa
cagattgatcatcagagcgccatggatacacaaaatacaccgcttgatcatgttactaca
gcttgcgatgattttcaagatactgcttttgcgaataatacagagttcttgaatgtagat
ggtgatgaaatgggtgaagatgatgaggaaggtatgccaaatgctgaagacactcgcctt
cttgagaacagtggatggtcttctcgcaccagagctgttgccaagtaccttcaaactcta
tttgataagaaagcaggacatggaaaggtcctgtcgatggacaacctactagctggtaaa
acacgcaaggaagcatcgagaatgttctttgagacattggtacttgcaacaagggattat
gtccatgtagaacaggcgaagccttttgacaacattaatataaaaccacgagcaaagcta
gtcgaatcagacttctga
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