KEGG   Manihot esculenta (cassava): 110628259
Entry
110628259         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM36B
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110628259
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110628259
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110628259
   03041 Spliceosome [BR:mesc03041]
    110628259
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110628259
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110628259
Spliceosome [BR:mesc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110628259
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 110628259
NCBI-ProteinID: XP_021630526
LinkDB
Position
12:complement(345626..347981)
AA seq 91 aa
MSTGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
NT seq 276 nt   +upstreamnt  +downstreamnt
atgagtaccgggggagaaaagggatcaacaaccacaaaaacgccagccgatttcctcaaa
tcaattcgagggcgacctgttgtagttaagctcaattctggagttgattacagaggtatt
ctagcttgcctggatggctatatgaatatagccatggaacaaacagaagagtacgtaaat
ggacaattaaaaaacaagtatggcgatgctttcattcgaggaaataatgttctgtacatc
agtacatcaaagaggacgcttgcagatggtgcatag

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