Manihot esculenta (cassava): 110628285
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Entry
110628285 CDS
T05761
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110628285
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110628285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110628285
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110628285
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110628285
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110628285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_EML
WD40_RFWD3
zf-C3HC4
Beta-prop_WDR90_POC16_2nd
WD40_like
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
U-box
zf-C3HC4_4
Beta-prop_SCAP
zf-RING_5
DUF1664
zf-RING_10
Beta-prop_IFT122_2nd
STL11_N
RPM2
Motif
Other DBs
NCBI-GeneID:
110628285
NCBI-ProteinID:
XP_021630577
LinkDB
All DBs
Position
12:complement(7241798..7249777)
Genome browser
AA seq
677 aa
AA seq
DB search
MEEVSTGAIVPAVKPEPRPSPSFAAAAAASPDQTAQAGAKDAGFSELEKDFLCPICMQII
KDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTSNQLFPNFLLQKLLKKVSARQTSKN
ASPVECFLQALQQGCEIPIKDLDNLMSLLAEKKRKMEQEEAERNMQILLDFLQYLRKQKV
DELNEVRTDLQYIKEDIEAVERHRIELYRTRDRYSMKLWMLGDDPNVRKPWPSTLDRNSG
GVISSSLNAKGGLTAGNLPTKTMDGKSQVSSHGLQRKDTLSGSDSQYNRSGLSVVRKKRV
HAQFNDLQECYLQKRRLLTTQPHNQQERDKNIIDREGYSTGLVEFQSVLNTFTQYSRLRV
IAELRHGDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVLNDPADVHCPVVEMS
TRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSM
LVSGSDDCKVKVWCTNQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNI
SHPLHMFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNVPVRTFRGHTNEKNFVGL
SVNRDYIACGSETNEVFVYHKEISRPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPT
MLAANSQGTIKVLVLAA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtctcaacgggggccatagttcctgcggtgaagccggagcctagaccatct
ccttccttcgctgcggcagcagcggcttctccggatcaaaccgcgcaggcgggggcgaag
gacgcgggtttttcagaattggagaaggattttctttgcccaatttgtatgcaaatcatt
aaagacgcgtttcttacagcttgtggccacagtttttgctacatgtgtataattactcac
ctccgcaacaagagcgattgcccttgctgcggacattacctcactagcaaccagctcttc
cctaatttcttactacagaagctattgaagaaggtttctgcgcgtcaaacatcaaaaaat
gcatcccccgttgagtgttttcttcaggcactgcaacagggttgtgaaattccgatcaag
gatctggacaaccttatgtcgctgcttgctgagaaaaaaagaaaaatggagcaagaagaa
gctgagagaaatatgcaaatattgctagacttcttgcagtacttacggaagcaaaaagtt
gatgaattgaatgaggtgcggacagatctccagtatattaaggaggacatagaggctgta
gagagacataggattgagttataccgtactagagacaggtattctatgaaattgtggatg
ctcggagatgatcccaatgtgagaaaaccatggccttcaacattagataggaatagtggt
ggtgtgatcagcagttctctaaatgcgaaaggagggttgactgcagggaatcttccaact
aagacaatggatggcaagtctcaagtaagctctcatggacttcagagaaaggatacttta
agtggatctgattcacagtataatcggtcaggcctatctgtggtaaggaaaaagcgggtc
catgcacagttcaatgacctacaagaatgttatctgcaaaagcgtcgtctgttgacaacc
caaccacataaccaacaagaaagggataaaaatatcatagatagagagggctacagcaca
ggtctagtagaatttcagtctgtgctgaataccttcactcagtacagtcgcttgagggtc
attgctgaacttaggcatggggatatatttcactctgccaatatagtgtcaagcatagaa
tttgaccgtgatgatgaattgtttgctactgctggagtttcaaggcgaatcaaagttttt
gacttctccactgtactgaatgaccctgctgatgtgcattgtcccgttgtggagatgtca
acacgttctaagcttagttgcttgagttggaacaagtatgctaagaatcagatagctagt
agtgattatgagggaatagtaactgtttgggatgtgacaactaggcagagtgtgatggaa
tatgaagaacatgaaaaacgtgcatggagtgttgacttttctcgtactgaaccctcgatg
cttgtgtctggtagtgatgattgcaaggtgaaagtttggtgcacaaatcaggaagctagt
gttatcaacattgacatgaaagcgaatatttgctgcgtcaagtataatcctggttctagc
aattacattgcggttggttccgcagaccatcatattcactactatgacttgagaaatatc
agccatccgctccatatgttcagtggacatcgcaaagctgtttcatatgtgaaattcttg
tccaacaatgagcttgcttcagcatctactgacagtacattacgattatgggatgtcaag
gataatgtgccagttcgtaccttcagaggccacacaaatgagaagaattttgtaggtctc
tcagtaaaccgtgattacattgcatgtggcagcgaaacaaatgaagtttttgtctaccac
aaggaaatatccagacctgttacatggcacagatttggctcacctgaaatggatgacgct
gatgaggatgctggatcttactttattagcgccgtctgctggaagagtgatagccctaca
atgctagccgcaaatagccagggtacgattaaagtactagttcttgcagcgtaa
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