Manihot esculenta (cassava): 110628555
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Entry
110628555 CDS
T05761
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110628555
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110628555
Surveillance factors
Other surveillance factors
110628555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
110628555
NCBI-ProteinID:
XP_021630974
LinkDB
All DBs
Position
12:841066..850047
Genome browser
AA seq
1612 aa
AA seq
DB search
MAEGKFDLPDDLLSSKPSDHSWTPKVEALGIDAEKVSAGLHDETKDQLASESSIPLSPQW
LYSKPSETKMDMRTLTSASIGNSNDPSQKDGWRLDGSEDKKDWRRIATENESSRRWREEE
RETGLLGSRRDRRKTDRRGDNVSIRETADNRVLPSPDRWHEGSNRNSGHEARRDSKWSSR
WGPEDKEKESRIEKRIDADKEKDDAHYDNQSAIVSNRSADSDSRDKWRPRHRMEGHSTGS
TSYRAAPGFGLERGRGEGSNLGFALGRGRSNAIGRSSSAGIITAPHTHRSGNVIGKPNLS
IETFCYPRGKLLDIYRRQKLDSSFSAMPDEMEESLPITQADIVEPLAFVAPDAEEEVTLT
DIWKGKLTSSGVVYNSFRKGRSTENVSGAGDDEYVEGKLGILSSVQSEVTADTFQGAAND
GAYQTDGDHSLWNHDSRLNALDEKHHNHDANKVTTDTAIGLECDVAGTIKEIFTSSDGAS
QLNISENGQIVNSALTRHFHSDDIDLASSFDVKSKLPDDSNSLFTLPSPDQDNSSSLLHL
VSKSEAKDLEMSTPHEDLYFYYIDPHGNTQGPFLGADIILWFEEGYFGTDLPVRLADAPE
GTSFQSLGDVMPHLKLRGVYPSSEQEQSSALGGKLEPGLPPAAPDNTDSSAVNELRQPLS
DLSSLSAHHVQSRISEPENPLQLPHSEGQSFHDFVAHDEEIVFPGRPGSSSYPIMQPSGN
AGDPLVKSNGQPSLLHELTEPGLPYQSDNKLHPFGLLWSELEGSQTRQLDSPNIPSNVGR
PSPFGAMTDRGVEKWSDVYRQEMLSVPNSFQDATAARHLSRIEQEPNHFGLAEQHMSRQF
QQQQQQIQQRNMLSSHSHLNESLLEHVPGQNLIHHQQLANHPVPDLEHLLALQLQQQQQQ
QQQQQQQRQLQLQQQQQQLHQQQKLLQERQQSHARQVLLEQLLHGQMADPGPVQSRVDPL
RANNVLDQVLLEQQLLHELQQRSHHPQRNFVPSVEQLAQAKFGQASQQDHHRDLIELLSR
AQHGQIQSLEHQILQEQLQARQLPMGLRQRMNLEEERHIDSMWPPVNENDQFFRSLNQRA
HSSGLSPLDFYQQQQRPPHEDQLSHLERNLSFQDRLLLGLYEPGSMLFERSLSLPAGASG
MNMDIVNAMVHAHGLDMQDLSSQMQSSGQVGTLSSGTHPHNPHHHMVPNQFHVSHLDAIE
GHWPESNGPLTNDWMESRIQQLHINSERHKRGSDIKLTAEDSSLWMSDGLNDEKSRRLLM
ELLNQKSGHQSSETLQMSEGMPFEKKSPSGIYSGSSSSDHPFAVVSEWEASQNNSFAIGA
YGSNACESAEVSSAGEKASTEKLLFRSESGAACEGNLSLLGISHSAQAVLTDPKFVDKSS
INREYLEVEGRKHGSKAQVMAKNSVTEIHNGVADQAQLSNADRGEVPVNSLSRHSSLGVS
GCYDDKIGQQNFTEDININRVAVPSKGQENILLRRPPVSRASSSQEGLSELAADTVVRGK
SSSGVEGGNLVNQGADSTTFGKKDVRFRRTSSCGDADVSEPSFIDMLKSNAKKTTASEVQ
MTAAGSESSDGTQGGRSGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRIED
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaggaaagttcgatctgcctgatgatctcctatcatctaaaccgtccgatcac
tcctggacccctaaagtcgaagctttgggaattgatgcagaaaaagtttctgcaggttta
catgatgagaccaaagatcaacttgcatcagaaagcagcatacctttgtctcctcagtgg
ctttacagcaaaccaagtgaaaccaagatggacatgcgtactctaacttcagcatccatt
gggaattccaatgatccaagccagaaggatggttggcgcttagatggatctgaggacaaa
aaagattggagaaggatagctactgagaacgaaagtagccgccgatggcgtgaagaggaa
agggaaactggcctacttggttctagaagagatcgtaggaaaacagatcgtcgtggtgac
aatgtttctatccgagaaacagcagacaatagagttttgccatctcctgatcggtggcat
gagggtagtaaccgtaactctgggcatgaagcacgccgagatagtaaatggtcatctaga
tggggtcctgaagacaaagagaaggaatcccgaattgagaagaggatagatgcggacaaa
gaaaaggacgatgctcactatgacaatcaatcagcaatagttagcaaccgttcagctgac
tcagattctcgtgataagtggagaccaaggcatagaatggagggtcactccacaggttcc
acttcctatcgtgctgcacctggatttggacttgagagaggtcggggtgaaggttcaaat
ttggggtttgctcttggacgaggaagatcaaatgctattggtcgatcttcatctgcaggc
atcattactgctcctcatacacacagaagtggaaatgttattggaaagccaaacctctca
attgagacattctgctatcctaggggtaagctgctcgatatttatcggagacagaagctt
gattcatctttttctgcaatgcctgatgagatggaggaatctttaccaataacgcaagct
gacattgttgaaccattggcctttgttgctcctgatgctgaagaggaggtcactcttact
gacatatggaaggggaaactcacgagtagtggtgtagtatataattcattcagaaaaggg
aggtcaacagaaaatgtttcaggtgctggagatgatgaatatgtcgagggaaaattgggt
atcctctcctcagttcaatctgaagtgactgctgatacttttcaaggtgctgcaaacgat
ggtgcatatcaaactgatggtgatcattccttgtggaatcatgattcacgtttaaatgcg
ctagatgaaaaacatcataatcatgatgcaaacaaggttactactgacactgccataggt
ttggaatgtgatgttgctgggactataaaagagattttcacctcttctgatggtgcttct
cagcttaatatcagtgaaaatggacagatagtgaactctgctttgactagacattttcat
tctgatgatattgatttagcctcttcttttgatgttaaatctaagcttcctgatgactca
aactcactatttactctcccctcccctgaccaagacaatagcagctctttgttgcatctg
gtaagtaaaagcgaggcaaaagatctggaaatgagtacaccgcatgaggacttgtacttc
tattacattgatcctcatgggaatactcaaggaccatttcttggagctgacataattttg
tggtttgaagagggctattttgggacagatttgccagttcgcttagcagatgctcctgaa
ggtacatctttccaaagtttgggagatgtcatgccacacctaaaactgaggggagtgtat
cccagttctgaacaggaacagtctagtgctttaggaggaaaattggagcctggtttacct
cctgctgctccagacaatactgattcatctgcagtaaatgagttgcgccagccattgtct
gacttgagtagcctttcagctcaccatgttcagtcaagaatatctgaacctgaaaatcca
cttcagttgccacactctgagggtcaaagttttcatgattttgttgcacatgatgaagaa
attgtttttccaggaaggcctggtagtagcagctatcctatcatgcaaccatctgggaat
gctggtgatcctttagtaaaatccaatggtcaaccatctcttctacatgaattgacagaa
cctggtttaccatatcagagcgataacaaattgcacccttttggtttgttatggtctgag
cttgaaggctctcaaactagacaacttgactcgcctaatataccttccaatgtgggaagg
ccttctccatttggtgctatgaccgatcgaggtgtagagaaatggtctgatgtttataga
caagaaatgctttctgttcctaactcatttcaagatgccactgctgctcgccatttgtca
cgtattgaacaagagcctaatcattttggcctagcagaacagcatatgtcacgacaattt
cagcagcagcagcagcagatccaacaacgaaatatgctatcatctcattcacacttgaat
gaatcacttctagaacatgtgccaggtcagaatcttattcaccatcagcagttggccaac
catcctgttccggatctggaacatcttctggcacttcagttgcagcaacagcaacagcaa
cagcaacagcaacagcaacagcggcaacttcagctccaacagcaacagcagcaattacat
caacagcaaaagcttttgcaggaacgacaacaatcacacgctcggcaggtgcttcttgaa
cagttgttgcatggtcagatggctgatcctggccctgtacaatcacgcgttgaccctctt
agagctaacaatgttcttgatcaagttttgttggagcaacagcttctgcatgagttgcaa
caacggtctcatcatcctcaaaggaactttgttccatctgtagagcagcttgctcaagca
aaatttggtcaggcatcacagcaagatcaccatagagatttgattgagctattatcccgt
gcacaacatggtcaaatacaatccttagagcatcagattctccaagaacagctgcaggca
aggcagttgcccatgggattgagacagcggatgaatttggaagaagagaggcatattgat
tctatgtggccaccggttaatgaaaatgatcagttcttcaggagtcttaatcaaagagct
cattcttcaggacttagcccattagatttttatcagcaacagcagaggccaccacatgag
gaccagttgagccaccttgaaagaaacctgtcatttcaagaccgactgctactagggctt
tatgagcctggctcaatgctgtttgagaggtccctgtctttgcctgctggtgcttcgggg
atgaacatggacattgtaaacgctatggttcatgctcatggtttagatatgcaggatttg
agttcacaaatgcaatcttctggccaagtgggaacattgtcttctggaacgcatccacat
aatcctcatcaccatatggttcctaaccaattccatgtttcacatctagatgcgattgaa
ggccactggcctgaaagcaatgggccactaacaaatgactggatggaatctcgaattcaa
caattgcacatcaattctgaacggcataaaagggggtctgacattaaactgactgctgaa
gattcaagtttatggatgtcagatggattgaatgatgaaaagtctaggcgattgttaatg
gaattactaaatcagaaatcgggtcatcaatcttctgagacacttcagatgagtgaagga
atgccctttgagaagaagtcaccatcaggcatttactctggatcaagctcttcagatcac
ccttttgctgttgtttctgaatgggaagctagtcaaaacaactcatttgcaataggagct
tatggttctaatgcttgtgaatcagcagaggtttcttcagctggtgaaaaggccagcaca
gaaaaattactgtttagatctgaatctggagcagcatgtgagggaaatttatcattgtta
ggcattagtcatagtgcacaggcagttctcacagatcctaagtttgttgataagtcatct
atcaatagagagtatctagaggtagaagggaggaagcatgggtccaaagcgcaggttatg
gcaaagaattcagttactgagatccacaatggcgtagctgatcaagcacagctgtctaat
gctgatcgtggagaggttccagttaattctctcagcaggcattcttctcttggggtttct
ggatgttatgatgacaagattggacaacaaaatttcacggaagatattaacataaatcgg
gtggctgtaccatccaaggggcaagagaatatattgttgaggcggccacctgtgtctcgt
gcttcatcatctcaagaagggttatctgagctggctgctgatacggttgtgaggggaaaa
agttccagtggtgttgagggtggaaatctggtgaaccaaggtgctgacagcacaactttt
ggcaagaaagatgtgcgtttccgaagaacctcatcttgtggggatgctgacgtgtcagag
ccatcatttatagacatgcttaaaagtaatgccaagaagaccactgcttcagaggtacaa
atgacggcagcggggtcagaatcatcagatgggacacaaggtggccgaagtggcaaaaag
aaaggtaaaaaagggaggcaaattgatcctgctctccttggttttaaagtaacaagcaat
cggatcatgatgggtgaaattcaacggatcgaggattaa
DBGET
integrated database retrieval system
