Manihot esculenta (cassava): 110628598
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Entry
110628598 CDS
T05761
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110628598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110628598
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110628598
Spliceosome [BR:
mesc03041
]
Complex C
Other components
Step II factors
110628598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
PhoH
DUF4606
T2SSE
NB-ARC
FtsK_SpoIIIE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110628598
NCBI-ProteinID:
XP_021631048
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All DBs
Position
1:complement(5625292..5635238)
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AA seq
726 aa
AA seq
DB search
MPSMAQNGPRSNLQNQKKQSNFPNKSRNSDSLARRERIKSQRLSLPIASVKERLIEEVKT
HDILIIVGETGSGKTTQLPQFLFNAGFCRDGKAIGITQPRRVAAVTVAKRVAEECGVELG
QKVGYSIRFDDKTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLG
LLKNVQNVRSNSMKDHVNTDDKKSKNRTVQEKGTGAQCTSFLKQGHGRKFPPLKLIIMSA
SLDARVFSEYFGGARAVHIEGRQHHVDILYALHPVQDYLDATLVTIFQIHLEEAPGDILV
FLTGQEEIESIEGLVQEQLHKLPEANRKLSTVPIFSSLPSEQQMRVFMPASPGHRKVILA
TNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIIIPTSKAQALQRSGRAGREGPGK
CFRLYPEHEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRAAIIKSLE
HLFLLGALTDDCKLSEPVGHQMARLPLDPIYSKALILASQFNCLEEMLITVAMLSVESIF
YTPREKLDEARTAAKCFSSPDGDHLTLVNVYRAVDGLLEKRKMEFGNEKSLKGKNEKFLR
KWCKENFINGRSLRHARDIHSQIRGHVEQMGLRISSCGDDVLQFRRCLAASFFLNAALKQ
PEGTYRALASGQVVQIHPSSVLFQSKAECVIFNELVQTTKKYIRNVTRIDYLWLTELAPH
YYASQS
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggcgcagaacggacccagaagcaatcttcaaaaccaaaagaagcagtcc
aacttccccaataagtctcgcaattctgattctttggccaggagagagaggattaagagt
cagaggttgtctctacctatagcttcagttaaggaacgacttattgaggaggttaaaacc
catgatatattgatcattgttggtgaaactggaagtggaaaaacaactcaattacctcag
tttctgttcaacgctgggttttgtcgagatggaaaagctattgggataacgcaacctagg
cgtgttgcggcggtcactgtggcaaaacgggtggcagaggaatgcggcgttgagctggga
caaaaggttggatattccatcaggtttgatgacaaaacctctagctctacaaggattaag
tacatgactgatggattgctactcagggaagcattactggatccttacctctctagatat
tcagtcatcattgttgatgaagctcatgagagaactgtccacactgatgttctgctggga
ttgctaaaaaatgtacaaaatgttaggtcaaactctatgaaggaccatgtcaatacggat
gacaagaagtcaaagaacaggacagtgcaggagaaaggaactggtgctcaatgtactagt
tttctcaagcaaggccatggcaggaaattccctccactgaagttaatcataatgtctgcc
agcttggatgctcgtgttttttctgagtattttggtggtgccagagctgttcatattgaa
gggcgccaacatcatgttgatatactgtatgctcttcatcctgtgcaagattatcttgat
gcgaccttggttactatattccagattcatttggaggaggcccctggtgacatacttgta
tttctaactggccaagaagagattgagtccattgaaggacttgtgcaggaacaacttcat
aaattacctgaagccaatagaaagttgtcaactgttcctatattttcatctcttccatcg
gagcagcagatgcgggtcttcatgccagcttcacctgggcatcgtaaggtaatattggca
acaaatattgctgagacatctgtgacaatacctggaatcaaatatgttatagacccagga
tttgtgaaagcacgttcttatgatccagtcaaagggatggaatcattgataattattcca
acttcaaaagctcaggcacttcaaaggagtggacgtgcaggtcgcgaaggacctggaaag
tgctttcgtctgtatccagagcatgaatttgagaaacttgaggattcgacgaagccagag
atcaagcggtgcaacctctcaaatgtcatcttgcagctgaaggctctgggtgtcgacgat
atcattgggtttgatttcatggaaaagccatctagggcagctatcatcaaatcattggag
catctgtttttgcttggtgctttgacagatgactgtaagttgtcagaacctgttgggcat
caaatggctcggcttcctttagatcctatttattccaaagctctcatcttagctagtcag
ttcaactgcttggaagaaatgctgataactgttgcgatgctctcagtggaatctattttt
tatacccctcgtgagaaattggatgaggcgagaactgcagcgaagtgcttttcaagtcca
gatggagaccatcttactttggttaatgtgtatcgggcagtagatggacttttggaaaag
agaaagatggaatttggtaatgaaaaaagtctcaaaggaaaaaatgaaaaatttctgaga
aaatggtgcaaggaaaatttcattaatggccgttcactgaggcatgctcgtgacattcac
agtcaaattcgaggacatgttgaacaaatgggtcttcgtatttcttcatgtggagatgat
gtgcttcaatttcgaagatgccttgctgcttcctttttccttaatgcagctttgaagcag
cctgaggggacgtacagggccttggcaagtggacaggtagtgcagatacacccttcttct
gtgttattccagtcaaaggcagaatgcgtaattttcaatgaactggtccaaaccactaag
aagtacatccgcaacgtaactaggatcgattatttatggttaactgagcttgctcctcac
tactatgcctcacagagttaa
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