Manihot esculenta (cassava): 110628643
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Entry
110628643 CDS
T05761
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110628643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110628643
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110628643
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
110628643
NCBI-ProteinID:
XP_021631115
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Position
12:complement(2612807..2616951)
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AA seq
485 aa
AA seq
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MATLADSFLADLDELSDNDADIIEEDDVDAGNMEEDIDGDMADIETLNYDDLDSVSKLQK
TQRYNDIMQKVEDALEKGSDISNQGLVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRD
KYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKP
LPDEVLQKTIDACDRALALDAAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGL
SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEVFQTTPPALRMRACRLLAAK
STLAARVDSTRGDPSGNTGRSLREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYALTDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVAQSKLAA
KVAKKFKEKTYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSETGTFS
KIKRT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttgctgattctttccttgcggatcttgatgagctatctgacaatgatgct
gatattattgaggaagatgatgttgatgctggaaacatggaggaagacattgatggggac
atggcagacattgaaactcttaattatgatgatttggatagtgtgtctaaattgcagaaa
acacagagatacaacgacataatgcagaaagtggaagatgctcttgagaagggttctgat
atttcaaatcagggtttggtactggaagatgatcctgaatatcagcttattgtggattgc
aatgccttatcagttgacattgagaatgaaataattataatccacaattttattcgtgac
aagtaccgtttgaaatttcctgagcttgaatcacttgttcaccatcctatcgattatgca
cgtgtggtaaagaagattggcaatgagatggatttaacccttgtagacctggaagggctt
ttaccatcagctattattatggtggtctcagtaacagcatcgacaacaagtggcaagcca
cttcctgatgaagtccttcaaaagacaattgatgcatgtgatcgagctcttgctcttgat
gctgcaaagaaaaaggtccttgatttcgtagagagcagaatgggatacattgcaccaaat
ctttctgctattgttgggagtgctgttgcagcaaagcttatgggaacagctggtggtctt
tcagcattagccaagatgcctgcttgtaatgttcagcttcttggtgccaagaagaagaac
ctggcagggttttccacagccacatctcaatttcgtgtaggttatattgagcaaacagaa
gtatttcagaccacaccacctgctcttagaatgcgtgcttgccgattattggctgcaaaa
tcaacactggctgcacgggtagattctaccaggggggatccatcaggaaacacgggaaga
tcccttcgggaagagattcgtaagaaaatagaaaagtggcaggagcctcctccggcaaag
caacctaaaccacttccagttcctgactctgaacctaagaaaaagagagggggtcggcgg
ctgagaaagatgaaggaaagatacgctttgacagacatgaggaagcttgccaacaggatg
caatttggtgtgcctgaagagagctctttaggtgatggacttggggaaggctatgggatg
cttggtcaagctggaagcggcaagctgcgtgtatcagttgctcagagcaagcttgctgca
aaagttgcgaagaaattcaaggagaagacttatggaagtagcggggctacatctggtctg
acatcaagtctggcatttacgcctgtgcagggtattgaactcacaaatccgcaagctcat
gcacaccaactcggcagtggaacccagagcacctacttttctgagactggaacattttcg
aagattaagaggacgtaa
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