KEGG   Manihot esculenta (cassava): 110628652
Entry
110628652         CDS       T05761                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    110628652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mesc04121]
    110628652
   03036 Chromosome and associated proteins [BR:mesc03036]
    110628652
Enzymes [BR:mesc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110628652
Ubiquitin system [BR:mesc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110628652
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     110628652
    Noncanonical PRC1 (PRC1.1)
     110628652
    Noncanonical PRC1 (PRC1.3/1.5)
     110628652
    Noncanonical PRC1 (PRC1.6)
     110628652
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-rbx1 RAWUL zf-Nse zf-RING_11 zf-RING_10 zf-C3HC4_5 zf-RING_6
Other DBs
NCBI-GeneID: 110628652
NCBI-ProteinID: XP_021631127
LinkDB
Position
12:complement(14062025..14084507)
AA seq 496 aa
MPAQKRSLPDYPDNDEEDAPSSPLQNGHRYTKQSRLDPPPFSDPELHQQQELEEEEEDDD
APPKPEEGEEEDEVEGDADEEQEEQVEEKQPAEYSEESQSSSSEEEKPDCRFVFVELPDI
RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN
YDALIAALYPDIDKYEEEELAFHEEERTRNKKIQASIAQIFQRQSDALVRRRPIGRETTS
PFMARSQRNHRAIPSRRRQNGQGTEFQVCEDIEEENDDNGGKDSSSNEDRSAEVRQQRRK
RRLGLRPSHPSSSASNLEGGSIENDLEATKENKGISLGLVWNTEMLAWGRGGTRSHTRHG
NASGCNNKNSRSTRLSKLVEYLKSLEEKDDELDVHFVLISVDKESFMSLKQPYLCCRTNL
SVKHLCEYVALKKSLEAGEVEIFLVKGQHKPIDYISSLRPPISVDELQSLEGQETLAHLK
ANRDHLILAFRRKETI
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgcctgctcagaagaggtctctgcctgattatcccgacaacgatgaggaagatgctccc
tcttctcctcttcaaaacggccatcgatataccaaacaatctcgccttgacccacctcct
ttttctgaccccgaactccaccaacaacaagaactagaggaagaagaagaagatgatgat
gcaccccccaagccagaagaaggagaagaagaagacgaagtagaaggagacgcagacgag
gaacaagaagagcaagtcgaagagaaacaaccagcagaatattcagaagaaagccaatct
tccagctccgaagaagaaaaacccgattgcagatttgtctttgtggagctgccagacatc
cgtaaagatgtgcaatgcccaatttgtttaggtatcataaagaaaacacgaactgtgatg
gaatgtctgcaccgtttttgcagggagtgcattgacaaatcaatgcgactcgggaataat
gagtgccctgcatgtcgcacacactgtgcaagtcgacgctctctgagggatgatccaaat
tatgatgccttaattgctgctttatatccagacattgataagtatgaggaggaggaattg
gcttttcatgaggaggaaagaacgcggaacaagaagatccaagcttcaattgcccagata
tttcaacgacaatctgacgcactagttaggagacgcccaatcggtagagaaacaactagt
ccattcatggcaaggtcacagcgcaatcatcgggcaattccttcaaggagacggcaaaat
ggccaaggtactgaatttcaggtatgtgaagacattgaggaagaaaatgatgataatgga
ggcaaggattcatcatccaatgaagatcgctccgcagaagtaaggcagcagaggcgcaag
agacggctaggacttaggccttctcatccttcttcatcagcttcaaatctagaaggtgga
tccattgaaaatgatttagaagccaccaaagagaacaaaggaatatctcttgggcttgtt
tggaatacagaaatgcttgcctggggtaggggtggtactcgaagtcatacacgtcatggt
aatgctagtggttgcaacaacaagaactcccgaagcactcggttatccaagctggtagaa
tatctcaagagcttagaggaaaaagatgatgagttggatgttcacttcgtgcttatttct
gtggacaaggaaagttttatgagtttgaaacagccctacctatgttgtcgtaccaattta
tcagtcaaacacctatgtgaatatgttgctctcaaaaaatctttggaagctggagaagtt
gaaatatttttagttaaagggcagcacaagcccattgactacatatcctctctgcgtcca
ccaatttcagtggatgagctgcaaagtttggaaggccaggaaactttagctcatcttaaa
gccaatagagatcatttgattctagctttccggcgcaaggagactatttag

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