Manihot esculenta (cassava): 110628766
Help
Entry
110628766 CDS
T05761
Name
(RefSeq) rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
110628766
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
110628766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
110628766
NCBI-ProteinID:
XP_021631259
LinkDB
All DBs
Position
12:complement(32750339..32754013)
Genome browser
AA seq
666 aa
AA seq
DB search
MVVWSIFFFFFISFFAVSSGREILPNAYCSSPGPDVRLSWKNNHRMVIDNGFVQVTLSNP
TGDITEIQYNEMGNVLEFHNGESNRGYWDIVWNKPGTRVAYDRLKGTNSSVIMEDENQVE
VSFTRIWNASIGNYTAPLNVDKRYIVRRGSSGIYMYTTLERLEGWPDFDMDQIRIVFKLR
SDKFHTMVISDDKQRVMPAVKDCRKGQRLAYPEAVLLTDPTNPNHKGEVDDKYQYSCENK
DNRVHGWISEDPPVGFWVITPSDEFRAGGPLKQDLTSHVGPTALSMFTSTHYSGKDLDTR
YRNGKPWKKVFGPVYVFINSISIDEDPLLLWEDAKEQMLVEVESWPYDFPESEDFPSSFQ
RGSVSGQLLIHDRYVNKRLTWAGSAYVGLAAPGDVGSWQRDSQGYQFWTRANKEGYFLIE
NVRAGEYNLYAWIPGIIGDWKFDGNITVQSGYEIELGVLVYEPPRNGPTLWEIGVPDRTA
AEFFIPDTYPTLQNKLYTNHPTDKFRQYGLWQRYTDMYPTQDLIYTIGISNYRQDWFFAQ
VPRNTRNKTFQATTWQIKYDLENVNQTASYTLRVALASASAAELQVRFNDPNRRRPHFTT
GLIGRDNAIARHGIHGLYWLYNINVSGDLLGEKNNTIYLTQSRSKSPFCGIMYDYIRFEG
PSFTST
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggttgtttggtcgatcttcttcttcttcttcatctccttttttgctgtttcttctgga
agagagattttgccaaatgcgtactgctcatctccagggcctgacgttcggctatcttgg
aagaataatcacagaatggtgattgataatggctttgttcaagttactttatcaaatcca
acaggtgacataaccgaaatacagtataatgaaatgggtaacgtacttgaatttcacaat
ggtgaaagcaatcgagggtactgggatattgtgtggaacaagcctggaactcgtgtagcc
tatgatagattaaaaggaacaaactctagtgttataatggaagatgaaaatcaagtggaa
gtttcattcactagaatctggaatgcttccattggtaactacacagctcctctaaacgta
gacaagaggtatatagtcagacgtggcagctctgggatctacatgtatacaacgttagaa
cgcttagaaggatggcctgactttgacatggatcagattcgaatcgttttcaaacttcga
agtgataagtttcatacgatggtaatatcagatgacaagcaaagggttatgccagcggtt
aaagactgtcgcaaaggacaacgcctagcttatccagaagctgttctcttaactgaccca
actaatcccaatcataaaggagaggtggatgataagtatcaatattcatgtgagaacaaa
gataacagggttcatgggtggatttcagaggatccaccggtgggattttgggtgattacg
cctagtgatgagtttcgagcaggtgggcctcttaagcaagatctcacctctcatgtaggc
cccactgctctctccatgtttacgagtacccattactctgggaaggacttggatacgaga
tacaggaatggaaaaccatggaaaaaagtttttggtcctgtgtacgtcttcatcaactcc
atttcaatagatgaggaccctttattactttgggaagatgctaaagagcagatgttggta
gaagtggaaagttggccatatgattttcctgagtcggaggattttccatcttcatttcaa
agaggatccgtttcaggccaattattaatacacgacaggtacgttaataaaaggctaacg
tgggctggctctgcttatgtgggtttggctgcacctggagatgtgggctcatggcaaaga
gattctcagggctatcaattttggactcgagctaataaggaaggatatttcttaattgaa
aatgttcgagctggagaatataatttatatgcttggattcctggtattattggagattgg
aaatttgatggtaatatcactgtccaatcaggatatgaaattgaactgggtgttcttgtg
tatgagccaccaagaaatggtccaaccctttgggaaataggcgtccctgatcgaactgct
gctgagttttttataccagatacatatccaacactccagaataaactatatacgaatcac
cccacagacaagtttaggcagtatggactatggcaaagatacactgatatgtaccctacc
caagatctcatctacactattggcattagcaattatcgtcaggattggttttttgctcag
gttcccaggaacacaaggaacaaaacatttcaagcaactacatggcagataaaatacgat
ctagaaaatgtgaatcaaactgcaagctacacactcagagtggcattagcatcagcttct
gcagcagaactacaggttcgattcaatgatccaaatcggcgtcgacctcactttacaaca
gggttaataggcagggataatgccattgcaagacatggaattcatggattatattggtta
tacaacatcaatgtgtctggcgatttacttggagaaaaaaacaacacaatttatctaaca
caatcaagaagcaaaagtcctttctgtggaatcatgtatgattatattcgcttcgaaggt
ccttcatttaccagtacttaa
DBGET
integrated database retrieval system
