KEGG   Manihot esculenta (cassava): 110629093
Entry
110629093         CDS       T05761                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
mesc  Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mesc04121]
    110629093
Enzymes [BR:mesc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110629093
Ubiquitin system [BR:mesc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110629093
SSDB
Motif
Pfam: zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-C3HC4_4 zf-RING_10 Zn_ribbon_6 zf-rbx1 zf-Nse Prok-RING_4 zf-RING_4 zf-ANAPC11 Rtf2 RING_XB3-XBAT31 Sina_RING TRAF3_RING zf-RING_11 Zn_ribbon_19
Other DBs
NCBI-GeneID: 110629093
NCBI-ProteinID: XP_021631653
LinkDB
Position
13:5624266..5626471
AA seq 223 aa
MSTQAQGVRGPTLRGYRRRKTMLDLNVLPSESRDQEGTSTQDVQHGEQASQQGQPLPPAT
IDVEAFDDDVIESSPRAFAEAKSNARRNNAQRTHGSAVVVDVDSGQTTRLTYNNHNKRRR
LLPNQTIINCEHYVNLESSGSSTVISESGDNAPSAPSLPKEPTFNCPICMGPFVEETSTK
CGHIFCKACIKAAIRVQAKCPTCRKKISVKNLIRVFLPATSSL
NT seq 672 nt   +upstreamnt  +downstreamnt
atgagtactcaagctcagggagtgagaggccctaccttaagggggtatcggaggaggaag
acaatgctggacttaaatgtgcttccaagtgaaagcagggatcaggaaggaacttcaact
caggatgtgcagcatggagagcaagcaagccaacaaggccagcctttaccacctgctact
attgatgttgaggcttttgatgatgacgttattgaatcttcaccaagggcttttgctgaa
gccaagagtaatgctcgaagaaacaatgcccaaagaactcatggaagtgctgttgtagtt
gatgtagattcaggacaaacaactaggttgacttataataaccataacaagcgcagacga
cttctaccaaaccaaacaattatcaactgtgaacattatgtaaatttggaaagcagtggc
agctctacagtaatatctgaaagtggagataatgcaccatcagcaccttcacttccaaag
gagccaaccttcaactgtccaatttgcatgggcccatttgttgaggagacatcaacaaaa
tgtgggcatattttctgtaaggcttgcattaaggctgcaattagagtacaggcaaaatgt
cctacctgtaggaaaaaaatctcggttaagaaccttatcagggtgttccttccagcaacc
agttcattgtga

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