Manihot esculenta (cassava): 110629388
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Entry
110629388 CDS
T05761
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110629388
09122 Translation
03013 Nucleocytoplasmic transport
110629388
03015 mRNA surveillance pathway
110629388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110629388
03041 Spliceosome [BR:
mesc03041
]
110629388
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110629388
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110629388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
110629388
NCBI-ProteinID:
XP_021632025
LinkDB
All DBs
Position
13:complement(21880628..21887560)
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AA seq
695 aa
AA seq
DB search
MSSKYPTIDNRPIEQWKVTELKEELKRRKLTTKGLKDDLIKRLGEALLIEEENVAEDVDT
DIDLVKQPVDETKNSEAVPVVSDADKVDLNVIDAKTENMGGVKVQVDINDGAEATDKELS
EGSVQVDIHGGNNSSRFEGELTVPGATLGSSTTVSESVASDVTLGGQDAQNSETQKVNGD
SSPKLDNEDSKTHLDLQDSKSTLDNEDSKTQLENEGLRPPHEDVTFDSSAPNNQVSEVNP
NLGFQVKSDSISTDCVSINEKIELKDNIITDNVKLEIDVVKPEMVEPSSNISVPVGGESH
PMDVEEPQEKKTSVEKEDDNNATNADMCKKSDMVDIGYSEKLNLDRSSGDDSMEEDVVES
KRIDSKYNSDDVGDKSEKRETHVVVKEDIVDVVGNKSIGQKEIHVENKPDPVVPVEKRKL
NDQDAIGSAEPVKRQRRWKSDSLKMPESQRSSVTPTSTPKDACQPTLSRRNFSRSDSVSI
DDAPKERVVPPSQRPTTNSLRIDNFVRPFTLKAVQELLGKTGKVTSFWMDQIKTHCYVSY
SSVEEAVETRNAVYNLQWPPNGGRFLAAEFVDPKEVKIKVEAPQSPAARITPGATAAPPL
AQPSPRQQVSRQQLPPPPPLPPPPPLSNPPLAKEQLVHPPPPPPPPPHPEKHDPPIVTLD
DLFRKTRATPRIYYLPLSEEQVAAKLAEPGKNARQ
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatacccaactattgacaatcgaccgatagaacagtggaaggttacagag
ttgaaggaagagcttaaaaggcggaagttaacaacaaagggtttgaaggatgatttaata
aaacgtttaggtgaagcacttctcattgaggaggaaaatgtcgcagaggatgtggatact
gatattgatttggttaaacagcctgttgatgagacaaaaaattcagaggcagttccagtt
gtttctgatgctgataaagtggacttgaatgttattgatgcaaagactgagaatatgggt
ggtgttaaggttcaggttgatatcaatgatggagctgaagccacagataaagaactcagt
gaaggtagtgttcaggttgatatccatggtggtaataattcttctaggtttgaaggggag
ctcacagttcctggagctactctgggaagcagcactacagtttctgagagtgtggcatct
gatgtaacattgggtgggcaagatgcacaaaactctgaaacacagaaagtgaacggggat
tctagtcccaagctggacaatgaggattccaagactcacctggaccttcaggactcaaaa
tccacgctggacaatgaggattcaaagacccagctggagaatgagggtttgaggcctcca
cacgaggatgtgacgtttgactcttctgctccgaacaaccaggtatctgaggtcaaccct
aacttagggtttcaagtaaaatctgattctatttctactgattgtgtgtcaattaatgaa
aagattgaactaaaggataatataattactgataatgtcaaattagaaatagatgttgtt
aagccagagatggtggaaccatcatccaatatcagcgttccagttggtggtgaatcacat
ccaatggatgttgaggagccgcaagagaagaagacatctgttgaaaaggaggatgacaac
aatgctacaaatgcagatatgtgcaagaaaagtgatatggtagatattgggtactcggaa
aaattaaatttagacagaagttctggtgatgactcgatggaggaagatgttgtggagagt
aagcgaattgattcaaagtataactctgatgatgtgggtgacaaaagtgagaaaagagaa
acacatgttgtggttaaggaagatatcgtggatgttgtggggaacaagtctataggccaa
aaggaaatacatgttgagaataaacctgatccggttgtgcctgttgagaaaagaaagctt
aatgatcaagatgctattggaagtgcagagcctgtaaagaggcaacgcagatggaaatct
gacagcctcaagatgcctgaatcgcaaagatctagtgtaacacctacttctacacctaag
gatgcatgtcagccaacactttctagacgcaacttttctcgatctgactcagttagcatt
gacgatgcaccaaaggaacgtgttgttccaccatcacaaaggcctacaactaattccctc
agaattgataattttgtgcgtcctttcaccttgaaagctgtccaagaacttctaggcaaa
actggaaaggtcaccagtttctggatggaccaaatcaaaacccactgctatgttagttac
tcatccgttgaagaagctgtagagacaagaaatgctgtgtataacctgcaatggcctcca
aatggtgggcgttttttagcagccgagtttgttgaccccaaggaagtgaaaataaaagtg
gaggcgcctcagtctccagctgcgcggatcactcctggtgctactgctgctccacctctg
gcacagccctccccccgtcagcaggtttctaggcaacaacttccaccaccacctcccctt
ccaccaccaccacctctgtctaaccctcctctggctaaggagcagcttgttcatccacca
ccgccaccaccgccaccaccacatccggagaaacatgatcctccaattgttaccctggat
gacctctttcggaaaaccagggcaactcctcggatatattatcttccattgtcagaagaa
caagtggcagcaaaacttgcagaaccaggcaaaaatgccaggcagtag
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