KEGG   Manihot esculenta (cassava): 110629489
Entry
110629489         CDS       T05761                                 
Name
(RefSeq) splicing factor U2af large subunit B isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110629489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110629489
Spliceosome [BR:mesc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110629489
 Complex B
    110629489
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded DUF4154 PPV_E2_N
Other DBs
NCBI-GeneID: 110629489
NCBI-ProteinID: XP_021632168
LinkDB
Position
13:34588484..34593291
AA seq 587 aa
MTDYEGGRYDGNGADFDNDNYGSGGGGFSPQPRASSHSHGGADDHSDSKSQHGTRDYERE
SSKSREKEREKGRDKDRDRDRDRDREKDREKSKDRERDRERDRDKDRDRHHRDRDRHRDR
SERRERGRDRDDDDYHRSRDYDRDRRRDFDREDRHRLLSKSPSRGRSERRSKSRSRSRSR
SKSKRISGFDMAPPPSAMLAGAAAAAAAAGQIPGTSPAISGMFPNMFPLGAGQQFGALPV
MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINH
EKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAA
VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF
CVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQENVLLHAQQQIALQRLML
QPVPTKVVCLTQVVTADELKDDEEYEDILEDMRTEGGKFGTLANVVIPRPKADGEPSPGV
GKVFLDYADVEGATKARAGMNGRKFGGNQVVAVFYPENKFYQGEYDG
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgactgactacgagggaggaagatatgacggcaatggtgccgatttcgataacgataac
tacggttctggcggtggtggcttctctcctcagcctcgcgctagcagccacagccatggc
ggagccgatgatcacagcgattccaaatctcagcatggtactcgagactatgaaagagag
tcttcaaaaagtagggaaaaggagagggagaaaggacgtgataaagatagggatagggat
cgggatcgtgatagggaaaaagatagggagaaaagcaaggacagggagagggatagggaa
agagaccgggacaaggatcgtgaccgtcaccatagagatcgtgatcggcatagagatcga
agtgagaggagggaacggggtagagatagagatgatgatgattatcatcgaagtcgagac
tatgatcgggataggcggagagattttgatagggaagaccggcataggcttctatcaaaa
tctccttcaaggggtagatcagagcgcagatccaaatcacgttctcgttcccgttcccgt
tctaagagcaaaaggatcagtggttttgatatggctcctcctccctctgcaatgttggct
ggtgcagctgcagcagctgctgctgcaggtcagatacctgggacaagtcctgccatttct
ggaatgtttcctaacatgtttcccttaggagctggtcagcagtttggtgcacttccagtt
atgccagttcaggcaatgacacagcaggccactagacatgctcgacgggtatatgttgga
ggacttccccctacagctaatgaacagtctgtagcaactttttttagccaagttatggct
gcaatcggaggaaatactgctggtcctggggatgctgttgttaatgtctatataaaccat
gaaaagaaatttgcatttgtggagatgaggtctgttgaggaggctagtaatgcaatggct
ttagacggaattatttttgagggagcacctgtcaaggtgaggagacctagcgactataat
ccatctcttgctgcgacacttggtccaagccagcccaatcctaatcttaacctcgcagca
gttggcttaactccaggctctgctggtggacttgagggtcctgaccgcatctttgtgggt
gggcttccctattacttcacagaagcacaaatcagagagttgttggaatcttttgggcct
cttcgaggttttgatctagtcaaagacagagagactggcaactcaaagggctatgcattt
tgtgtttatcaagatctttcagttacagacatagcttgtgcagctctgaatggaattaaa
atgggtgacaaaactctcactgttagacgtgccaaccagggaactaaccaacctaagcct
gagcaagagaatgttctattgcatgcacagcagcagattgcattgcagaggcttatgtta
caacctgttcctactaaagttgtatgcctaacacaagtagtcactgcggatgaactcaaa
gatgatgaggagtacgaagacatcttggaagatatgagaacggaaggaggaaaatttggt
acattggcgaatgttgttatcccacgcccaaaggcagatggtgaaccttcaccaggagtt
gggaaggtgttcttggattatgctgatgttgaaggtgctacaaaagcccgagcagggatg
aatggacgtaaatttggtgggaatcaagttgtggctgtgttttatcctgagaacaagttc
tatcagggagaatatgatggctag

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