Manihot esculenta (cassava): 110629567
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Entry
110629567 CDS
T05761
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110629567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110629567
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110629567
mRNA cycle factors
Common to processing body (P body) and stress granule
110629567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
110629567
NCBI-ProteinID:
XP_043815863
LinkDB
All DBs
Position
1:35817760..35824551
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AA seq
977 aa
AA seq
DB search
MMIVQMDKMSAPSSRERAQRLYEKNVELENKRRKSAQARIPSDPNAWQQMRENYEAIILE
DHGFSEQHNIEYTLWQLHYRRIEELRTHFSAALANTKSNTSQGARPDRITKIRLQFKTFL
SEATGFYHDLILKIRAKYGLPLGYFSEDSDNRIFLEKDGKKSANMKKGLISCHRCLIYLG
DLARYKGLYGESDSKIREYAAASSYYLEAASLWPSSGNPHHQLAILASYSGDVLVAVYRY
FRSLAVDNPFTTARDNLIVAFEKNRQSYTQLLGDAKGSVVKDSSVCSTNKGKGKGEEKPA
VKATDLDADVVNERTSNFCDTYKSFCIRFIYLNGILFTRTSLETFVGVLSSVSGEFCELL
SSGPDEQLNFGAHAVENALFIVRIISVLIFTVHNVKREALGQTYAEIVQRAVLLQNAFTA
VFELMGHILERFVQLHDPSSCYLLPGILVFVEWLACCPDVASGIDADEKQATVRLKFWNH
YVSFLNKISSFWSMSLDDNEDDTCFYNMSNYEEGETGNRPALWEDFEVRGFLPVLPAQTI
LDFSRKHTFGSEGSKEKIARVKRILAAGKALANIARIDQKTIFYDSRMKKFVIGVEPQIS
DDSILTFDYDLPKTNVVMQDIQPQKIDTVGFNAQPHVEEDEEDEVILFRPAVIEKRNDKP
SPHGAPYDGMKPSLVAADLKFYGGPVSSPLDMLQQSAFDSVPQIYAATSINAPQNLHAIQ
PPASKWVMEEADSLARSLKAVRFMENGHANKQELPKDLSMSLPATHAIPIQQPANVNASM
FYNQAKVPEDVIPSKIDVVAASGVISESLAVKTSAAFPAGLRKSPVSRPVRHLGPPPGFS
HVPLKQVNETVYSPDLLSENALTDDYSWLDGYQLPSSTKVSGLTDATTFTSQSMPQCINS
SNGLTGTFSFPFPGKQVPSVQLQIEKQKGWHNHQAFEYLEVQQEQQLQQQLLNGNQQFTP
MPEQYHGNSIWSGRYIV
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtacagatggataaaatgtctgctccttcatcacgggagcgtgcacaacgt
ctctatgaaaagaacgttgagttggagaataagcgtcggaagtcagctcaggcaagaatt
ccgtcagatcccaatgcttggcagcagatgcgtgaaaactatgaagctataattcttgag
gatcatggtttttctgagcagcataatatagaatatactctttggcagttgcattatagg
cgcattgaggaactaagaactcattttagtgccgctcttgctaatactaaatcaaataca
tctcaaggagctcgacctgaccgtatcacaaaaataaggcttcagtttaaaacgtttctt
tcagaagcaactggattctatcatgatctaatcctgaaaatcagagctaagtatgggctt
cctctgggatacttctctgaggattcagataatagaattttcttggaaaaagatgggaaa
aaatcagccaacatgaagaaaggtttgatctcttgtcaccgctgtttgatatacttaggt
gaccttgcaaggtacaaagggctatatggggagagtgactcaaagatacgcgagtatgca
gcagcttcaagttactatttagaagctgcatctttatggccatcaagtgggaacccccat
catcagcttgctatcttggcttcctattcaggggatgtgttggtggcagtgtatcgctat
tttaggagtttggcagttgataatccttttacaacagcaagagataacttgattgttgct
tttgagaagaaccgacagagttacactcaactgcttggggatgctaaaggatctgttgtc
aaggattcatctgtgtgttcgactaacaaggggaaagggaaaggggaagaaaaacctgca
gttaaagccacagacttggacgctgatgttgtcaatgaaaggacatctaatttctgtgat
acatataaatcattttgcattcgttttatctacctgaatggtattcttttcacacgcacc
agcctggaaacatttgtgggagttctctcatcagtcagtggtgaattttgtgagcttctt
tcttctgggccagatgagcagctaaattttggtgcacatgctgttgagaatgctcttttc
attgtacggataatctctgttcttatattcacagtacacaatgtgaaaagagaagctttg
ggtcagacatacgcagaaattgtacagcgtgctgttctgctacagaatgcatttactgct
gtttttgagttgatgggacatatattagagaggtttgtgcagctgcatgatccttcttca
tgttatctcttacctgggattcttgtttttgtagaatggttggcctgttgtcctgatgtt
gcatcaggcattgatgcagatgagaaacaggccactgttagattgaagttctggaaccat
tacgtatccttcttgaacaagatatcgtcattttggtcaatgtctcttgatgataatgaa
gatgatacatgcttttataatatgagcaactatgaagagggggaaactggaaatcgacct
gctttatgggaagattttgaggtgagaggattcttacctgttcttcctgcgcaaaccatc
ttggacttctcaagaaagcacacttttggaagcgaaggcagcaaggaaaagatagctcgt
gttaaaaggattctagctgcaggaaaggctttagcaaatattgctaggattgaccaaaaa
acaatattttatgattcgaggatgaagaaatttgttataggtgtggagcctcaaatttca
gatgatagcattttgacttttgattatgacctgccaaaaactaatgttgtgatgcaagac
attcagcctcagaaaatcgatactgtgggattcaatgcacagccacacgtagaagaggat
gaggaggatgaagtaattcttttcaggcctgcagtgatagagaagcgaaatgacaagcct
agtccacatggggccccctatgatggcatgaaaccaagccttgtagctgctgatctcaaa
ttttatggaggacctgtttcatctcctcttgatatgctccagcaatctgcttttgattca
gttccacaaatatatgcagccactagtattaatgctcctcaaaatctacacgcaattcaa
ccacctgcctcaaagtgggtaatggaagaagctgattcacttgcaaggagcttgaaggct
gtcaggtttatggagaatgggcatgcaaacaaacaggagttgcccaaagatttgagcatg
tcccttcctgctacacatgctattcccatccaacaacctgcaaatgttaatgctagtatg
ttctacaatcaggcaaaagtgccagaagatgtgattccatcaaagattgatgttgttgca
gcttctggagttatttctgagagtttggctgtgaagacttcagcagcttttccagcaggc
ttgaggaaaagtccagttagtcgacctgtaaggcaccttggacctcctccaggctttagt
cacgttcctcttaaacaagtgaatgaaactgtttacagtccagatttgctgagtgagaat
gcactgactgatgattatagttggttggatggctatcaattgccatcatcaacaaaagtc
tctgggctcactgatgctactactttcacttctcaatcaatgcctcagtgtatcaatagc
agtaatggcttgaccgggacatttagcttcccttttcctggaaaacaggtgccatcagtg
caattacagattgaaaaacagaaaggctggcataaccaccaggcctttgagtatctagaa
gtacagcaagagcagcagttgcagcaacaactcttaaatggaaatcagcaatttactcca
atgcctgagcaatatcatggaaattccatctggagtggtcgatatattgtgtga
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