Manihot esculenta (cassava): 110629613
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Entry
110629613 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110629613
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110629613
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110629613
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
110629613
NCBI-ProteinID:
XP_021632355
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Position
13:complement(31153116..31190706)
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AA seq
609 aa
AA seq
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MAITEEKPAQETEHKGEEAEEEEEEEELTFEQLGLDPRLIRALNKKDISITKPTPIQRVA
IPLILEGKDVVARAKTGSGKTLAYLLPLVQKLFAISGSNRKLAPSAFILVPSGELCQQVH
KEFSSLIDSCKVQLKAVQLTTKMPDPDLRTALAGLPDIVVSTPACVAKCLSAGVLQSSSI
NDSLEILVLDEADLLLSFGYENDLKALTAFLPRRCQCLLMSATSSADVDKLKKLILHNPY
ILTLPEVEGVKDEAIPKNVQQFWISCSNQDKLLHILALLKLELVQKKVLIFTNSIDMSFR
LRLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDNETKEKEQADGSLAES
RKSKRHAKAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSAAGYVHRIGRTGRGYSTGASV
SLVSTDEMEILEDIKSFFGGDDSKDSNLISPFPLLTKNAVESLRYRAEDTAKSVTKVAVR
EARAQDLRNEILNSEKLKAHFKANPKDLDLLKHDKVLSKNPPAPHLRDVPDYLLDPTTKE
ASKMVKLARAAMGNNNNNSARRQGSRSKFKRNRDPLKSFSVEAPKRALKGKREGQDGDNT
RKHKRRRAV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggctataaccgaagagaaaccagctcaagagactgaacataaaggtgaggaagcagaa
gaagaagaagaagaagaagagctaacttttgaacagcttgggctcgaccctcgattaatt
cgagctttaaacaagaaggatattagtattacaaagccaaccccaatccagcgagtcgct
attcctctaatactcgaagggaaggatgtggttgctagagcaaagacaggctcagggaag
accctggcttatctgcttcctttggttcaaaagctgtttgcaatttctggttccaataga
aaacttgccccatctgcattcattctcgtcccaagtggggaattgtgtcagcaggtgcat
aaagagttctcatccctcattgattcgtgtaaagtgcagttgaaagctgtacagttgaca
accaaaatgcctgatcctgatttgcgcactgcattggctggacttcctgatattgttgta
tcaactcctgcttgtgtagctaagtgcttgtcagctggtgtgcttcaatcatcatccata
aatgattcgcttgaaattcttgttcttgatgaggcagatcttttattgtcattcggctat
gaaaatgatctaaaagctcttacagcttttctccctagacgttgtcaatgccttctaatg
tcagctacatcaagtgctgatgttgataaactgaagaagctcatcctacataatccatac
attttgactttgccagaggtggaaggtgtcaaggatgaagctatccccaagaatgttcag
cagttttggatttcatgtagtaatcaagacaagttactccacattcttgcccttctgaag
ctggagctggttcagaaaaaagttctgatatttactaattccattgacatgagtttcagg
ctgaggctctttttggaaaagttcggaataaaatctgctgttctaaatgctgagttgccg
cagaattctcgtcttcatatacttgaggaattcaatgcagggctttttgattatttaata
gcaactgatgacaatgaaacaaaagagaaggaacaagctgatgggagtcttgctgagtca
aggaaatctaaaagacatgctaaggctaagcagaagttggattctgaatttggagtagta
aggggcattgactttaaaaatgtacacacggttataaattatgacatgcctctaagtgct
gcgggatatgtacaccgaattggtcgtactggacgaggatatagcactggtgcttctgtc
tccctagtttctacagatgagatggaaattcttgaagatataaagtccttttttgggggg
gatgacagcaaggattcaaacttaatttctccttttcctttactcactaagaatgcagtg
gaatctttgcgatatagagctgaggatactgcaaagagtgtgacaaaggttgctgtcagg
gaagcacgagctcaggatttgaggaatgaaatactcaactctgagaagttgaaggctcat
tttaaggctaatcctaaggacctagatctactgaaacatgacaaggttttgagcaagaat
ccccctgctcctcatctacgtgacgtgccagattatctgctggacccaacaaccaaggaa
gcaagcaaaatggtcaaacttgcaagagctgcaatgggaaataataataataactctgct
cgccgtcagggatccaggagcaaatttaagagaaacagagaccctctgaagtccttctct
gttgaggcaccaaagagagctctcaaaggtaagagggaaggacaagatggtgacaatact
cgtaaacacaaaaggagaagagctgtctaa
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