Manihot esculenta (cassava): 110629627
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Entry
110629627 CDS
T05761
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04142
Lysosome biogenesis
mesc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
110629627
04148 Efferocytosis
110629627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110629627
Membrane trafficking [BR:
mesc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110629627
Hops complex
110629627
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
VPS18_solenoid_2nd
Clathrin
zf-C3H2C3
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
zf_RING_Vps8_fungal
zf-C3HC4_2
zf-RING_5
CHP04376
Motif
Other DBs
NCBI-GeneID:
110629627
NCBI-ProteinID:
XP_021632379
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All DBs
Position
13:7298249..7303426
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AA seq
960 aa
AA seq
DB search
MYQWRKFEFFEEKYGGKSKIPEDVSGKIECCSSGRGKVVIGSGDGTVSLLDRGLNFNFAF
PAHSSSVLFLQQLKQRNFLVTIGEDEQISPQQSAFCLKVFDLDKMQPEGTSSSVPDCIGI
LRIFTNQFPQAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERISRFKLQVDTVS
DKSDSSVTGLGFRVDGQALQLFAVTPSSLSLFSLHNQPPRRQMLDQIGCDVNSVTMSDRS
ELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRSGKDTFNVYDLKNR
LIAHSLAVKDISHMLCEWGNIILIMSDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQS
QQADAAATAEVLRKYGDHLYSKQDYDEAMAQYINTIGHLEPSYVIQKFLDAQRIYNLTNY
LENLHEKGLASKDHTTLLLNCYTKLKDVDKLNLFIKSEDGAGEHKFDVETAIRVCRAANY
HVHAMYVAKKAGRHELYLKILLEDLGRYDEALQYISSLEPSQAGVTVKEYGKILIEHKPA
ETIEILMRLCTEDGESAKRGSSSGAYLSMLPSPVDFLNIFMHHPLSLMNFLEKYTDKVKD
SPAQVEIHNTLLELYLSNDLNFPSISQASSGVDLSLSAKSGAARKSKAESNGKLIVDQKD
AYKEKEHAERCEKGLRLLKSAWPSELEHPLYEVDLAIILCEMNGFKEGLLYLYEKMKLYK
EVIACYMLSHDHEGLIACCKRLGDTGKGGDPSLWADLLKYFGELGEDCSKEVKEVLTYIE
RDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIDEDRRAIEKYQDDALAMRKE
IQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNERECPECASEYRSVME
MKRSLEQNSKDQDLFFQQVKSSKDGFSVIAEYFGKGIISKTNNGPKGTQRSRSLSSSSGF
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaaattcgagttcttcgaggagaaatatgggggaaagagtaagatt
cccgaggatgttagtgggaagattgagtgctgctccagcggcagaggtaaggtagtgatc
ggctccggcgatggtaccgttagcttactcgatcgaggtctcaacttcaatttcgctttt
ccagctcattcctcctccgtcctttttctccagcagctcaaacaacgcaacttccttgtg
actattggagaggatgagcaaatatctccacagcaatctgctttttgcctcaaggttttt
gaccttgacaagatgcagccagagggcacaagttcatctgtacctgattgtattggaata
ctgcgaatattcactaatcagtttcctcaagcaaagataacatcatttttagtgctggag
gaagctcctccaatactactcatagctattggcttagataatggttgtatttattgcatc
aaaggggacattgcaagggaacgtatctcgcgcttcaaacttcaggtggatactgtttca
gacaaaagtgattcatccgttacaggtcttggattcagagtggatggtcaagcccttcag
ttatttgctgtgacaccaagttctctgagtttattcagcttgcacaatcaaccacctagg
cggcaaatgctagatcagataggatgcgatgtcaatagtgtgacaatgagtgatcgctcg
gagttgataattggtcgacctgaagctgtttatttttatgaagttgatgggcgtggtcct
tgttgggcatttgagggagagaagaaattcctagggtggtttcggggttaccttttatgt
gttattgcagatcaaagaagtggcaaagatactttcaatgtttatgacctgaagaaccgc
ttaatagcccacagtctagcagttaaagatatttctcacatgctgtgtgaatggggtaac
ataatacttataatgtctgacaaatcagctttgtgtattggggagaaagatatggaaagc
aaactggatatgctattcaagaaaaatctttatactgtggctatcaatcttgttcaaagt
cagcaagctgatgctgcggcaacagcagaagtgctaaggaaatacggagatcatctatat
agcaaacaagattatgatgaggcgatggcccagtacatcaacactattggtcaccttgaa
ccttcatatgtgatacagaagtttctggatgcacaaagaatatataacctcacaaattac
ttggaaaatttacatgagaagggtcttgcttctaaagatcatactactcttctcttaaac
tgctataccaaattgaaagatgttgacaagctgaatctatttattaaaagtgaggatggt
gctggagaacacaagtttgatgtggagactgcaataagggtctgccgagctgccaattac
catgtgcatgcaatgtatgttgcaaagaaggcagggaggcatgaactgtatctaaagatc
ttgcttgaagaccttggcagatatgatgaggccttgcagtatatttcaagccttgaacca
agtcaggctggggttactgtgaaagaatatggtaaaatactcatagagcacaagccagct
gagacaattgagatactgatgaggctttgtactgaggatggtgaatcagctaaaagagga
tcttcaagtggtgcatacttatctatgttgccatcgcctgttgattttctcaacattttc
atgcatcacccactgtctcttatgaactttcttgaaaaatatactgacaaggtgaaggac
tctcctgctcaggtagaaattcacaatacactcttggaattgtacctgtcaaatgatttg
aactttccatcaatatcacaagccagcagtggtgtagatctttctcttagtgcaaagtca
ggagcagctaggaaatcgaaagcagaatccaatgggaaattaattgttgatcagaaagac
gcatacaaggaaaaagagcacgcagaaaggtgtgagaaaggactgcgcttgctaaagagt
gcatggccatctgaattggaacatccactttatgaagttgatcttgcaataattctgtgc
gagatgaatggattcaaagaggggcttttatatctttatgaaaagatgaaactatataaa
gaggttattgcttgctacatgctgtcccatgatcatgagggtttaattgcatgctgcaaa
aggctgggagatacaggtaagggaggtgatccatctctttgggctgatttgctgaaatac
tttggtgaactaggagaagattgctccaaagaagtgaaggaagttttgacttatatagaa
agagatgacatcctgcctcctattattgttcttcagaccttgtccagaaatccatgcctc
acgctctctgtcataaaggattatatagctcggaagcttgaacaagagtccaagctgatt
gatgaggatcgtcgagcaattgagaagtatcaggatgacgcactggcaatgagaaaagaa
attcaggatcttaggacgaatgcaaggatctttcagctcagcaagtgcactgcttgcact
ttcactcttgatcttccggctgtacacttcatgtgcatgcattcattccatcagcgttgc
cttggtgataatgaaagggaatgtcctgaatgcgcttctgagtacagatctgttatggag
atgaaaagaagtctggagcagaattcaaaagatcaagatctgttctttcagcaagtgaag
agttctaaggatgggttctcggtgattgctgagtattttggaaaagggatcatcagcaaa
accaataatggccctaaaggaactcagaggtctaggagtttgtcttccagcagtggattc
tga
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