Manihot esculenta (cassava): 110629964
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Entry
110629964 CDS
T05761
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X4
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110629964
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110629964
Surveillance factors
Other surveillance factors
110629964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
110629964
NCBI-ProteinID:
XP_021632897
LinkDB
All DBs
Position
13:1177893..1186321
Genome browser
AA seq
1616 aa
AA seq
DB search
MAEGKLDLPEDLLSSKPSDHSWTTPKVEALGSDEEKVSLGLNGEIKVITDQLASESSIPL
SPQWLYSKPNENKMDMRALTSVSLGNSIDPSLKDGWRLEGTEDKKDWRKTVTENESNRRW
REEERETGLLGPRRDRRKIDRRVDSVSIRETVENRVFPSPDRWHEANNRNPVHEARRDSK
WSSRWGPEDKEKEPRTEKRMDVDKEKDDAHNDNQSSIISNRSVSERDSDSRDKWRPRHRM
EVHSTGSTTYRAAPGFGLERGRGESSNLGFALGRGRSNAIGRSSSAGTSTGPHAYNSGSV
IGKPNVISETFCYPRGKLLDIYRRQKLDPSFAAMPDEMEECLPITQVDVIEPLAFVSPDA
EEEVTLTDIWKGTITSSGVAYNSFRKGRSTENVSGAGDYECNEGKLGVLSSVPSDDSADT
FQDASNNGTCQTDGGHSSWIHDSHLNVLNEKEVDHQGNKVTADGVTTTVLECNVAGTTKV
SINTSSAASPIDIRDNGQGVRSALTNFPADEVDSASPFDVKSKLPDDSNSLFVLPSPDQD
RSSAMLHLANKSDAKDLERSTQLEDFYFYYIDPHGNTQGPFLGADIVLWFEEGYFGTDLP
VRLADAPEGTSFQSLGEVMPHLKLRGVYPSSEKEQSGALGGNLEPGLPVAAPENTDVINE
LCQPLSDLNSLSAQHVQSRMSEPENPLHLPHSESQSFHDFVAHDEEIVFPGRPGSSGYPT
MQSSGNVHDPLAKSNGYPSLQNELSKPGLPYRSDNKLHPFGLFWSELEGSQNRQIEPDIP
SSVGRPAPLGAMTDSAAVAEKWSDFYRQDILSVPNSFQDATAARHLSHVEQEPNRFDLAE
QLMSQQFQQQQQQQQQRNILSHSHLNESLLEHVPGQNLMRHQQMVNRPVPDLEHLLALQL
QQQRQLHLQEQQQQFHQQQKLLQERQQSQARQVLLEQLLHGQMADSGLVQSHVDPIRANN
VLDQVLLEQQLLHELQQRSHHPQRHFVPSVEQLTQAKFGQTPQQDQQRDLFELLSRAQHG
QMQSLEHQILQEQLQARQLPMGLRQRMNMEESHIGSMWQQVNENDQFFRSSVNHRAHSSG
ISPLDFYQRQQRPPHEDQLSHLERNLSFQDRLQQGLFEPGSMPFERSLSLPAGVSGMNMD
VVNAMVHAHGLDMQELSTRMQSAGQVGTLSSGGHLHNSHHPVVPNQFHVSHLDAIDGRWP
EGNGPVANDWMESRIQQLHINSEWQKREPDIKMTAKDSSLWMSDELNDDKSRQLLMELLH
QKSGHPPSDTLHMSDGLSFEKRSMSGLYSGSSSSGHPLSVISDREASLNNSLAIGSYGSN
SCELAEVSSAGEQASSMGSTERVLFRSESGAKCEGILSLLGVSETQAVLGDSNFVDKSAI
NREYLEVEGRKYGSKIQGTAKSSVADVHNGTADQTRLAAMDHGEVPVHALSRHSSLGVSG
FYDDKIGQQNSYAEDVSLNHAPYGRVTVLSKGQENILLRRSPVSRASSSQGLSDLVSDTV
VRGKSSSSIEGGNPVSQTTDNTASGKKDVHSRRTSSCGDADVSEPLFIDMLKSNAKKTTA
SEVHMTAAVSESSDSTQGARSGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRIED
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaggaaagctcgatctgcctgaggatctcctctcctctaaaccatccgatcac
tcctggaccacccctaaagtggaagctttgggaagtgatgaggaaaaagtctctctgggg
ttaaatggtgagattaaagttatcacagatcaattggcttcagaaagcagcataccttta
tctcctcagtggctatatagcaaaccaaatgagaacaagatggacatgcgtgctctaact
tcagtgtctcttgggaattccattgatccaagcctgaaggacggttggcgtttggaggga
actgaagacaaaaaagattggagaaagactgttactgagaatgaaagtaatcgccgttgg
cgtgaagaggaaagggaaactggtttacttggtcctcgaagagatcgtaggaagattgac
cgtcgtgttgacagtgtttctatcagagaaacagttgagaatagagtttttccatcccct
gatcggtggcatgaggctaacaatcgtaaccctgtgcatgaagcacgccgagatagcaaa
tggtcctctcggtggggtcctgaagacaaagagaaggaaccacgaacagagaagaggatg
gatgtggataaagagaaggatgatgctcacaatgacaatcaatcttctatcattagcaac
cgttcagtttctgagcgtgactcagattctcgagataagtggagaccccgacatagaatg
gaggttcattcaacaggttccactacctaccgtgctgcacctggatttggacttgaaaga
ggtcggggtgaaagttcaaatttgggatttgctcttggacggggaaggtcaaatgccatt
ggtagatcttcatctgcaggcacctctaccggtcctcatgcatacaacagtggaagtgtc
attggaaagccaaacgtcatatcggagacattttgttatccaaggggtaagcttcttgat
atctatcgcagacagaagcttgatccatcttttgctgcaatgcctgacgaaatggaggaa
tgtttaccaataactcaagttgatgttattgaaccattggcctttgtttctcctgatgct
gaagaggaggttacacttactgatatatggaaagggacaatcacaagtagcggggtagca
tataattcatttagaaaggggaggtcaactgaaaatgtttctggcgctggagactatgaa
tgcaatgaaggaaaactgggtgtcctctcctcagttccctctgatgatagtgctgatacc
tttcaagatgcttcaaacaatggcacatgtcaaactgacggtggccattcctcttggatt
cacgattcacatttaaatgtgttaaatgaaaaagaggttgatcatcaaggaaacaaggtt
actgctgatggagtcactactacagttttggaatgcaatgttgctggaactacaaaagta
agcatcaatacttcctctgctgcttctccgattgacattagagataatgggcagggagtg
aggtctgctttgactaattttcctgctgatgaagttgactcggcctctccttttgatgtt
aaatctaagcttcctgacgattcaaactcgctttttgttctcccctctcctgatcaagac
cgtagtagtgctatgttgcacttggctaataaaagtgatgcaaaagatctggaaaggagt
acacaactcgaggacttctacttctattacattgatcctcatgggaatactcaaggacca
tttcttggagctgacattgtcttgtggtttgaagagggctattttggaacagatttgcca
gttcgcttggcagatgctcctgaaggtacatctttccaaagtttgggagaggtgatgcca
cacctaaaactgaggggagtgtatcccagttctgagaaggaacaatctggtgctttagga
ggaaatttggagcctggtttacctgttgctgctccagaaaatactgatgtaataaatgag
ttgtgccagccattatccgatttaaatagcctctctgctcagcatgttcaatcaagaatg
tcagagcctgaaaatccacttcatttgccacattctgagagccaaagctttcatgatttt
gttgcacatgatgaagaaattgtttttccaggaagacctggcagtagtggctatcctacc
atgcaatcatctgggaatgttcatgatcctttagcaaaatctaatggttacccatctctt
caaaatgaattgtcgaaacctggcttaccatatcggagtgataataagttgcatcctttt
ggcttattctggtctgagcttgagggctctcaaaatagacaaattgaacctgatatccct
tccagtgtgggaaggcctgctccactcggtgctatgaccgattcagctgctgttgcagag
aaatggtctgatttttatagacaagatattctttctgtccccaactcatttcaagatgcc
actgctgctcgacatttgtcacatgttgaacaagagcctaatcgttttgacctagcagag
cagctaatgtcacaacaatttcagcagcagcagcagcaacaacaacaacgaaatatacta
tctcattcacacttgaatgaatcgcttctagaacatgttccaggtcagaatcttatgcgt
catcagcagatggtcaaccgtcctgtgccagacctggaacatcttttggcacttcagctg
cagcaacagcggcagcttcatctccaagagcaacagcagcagtttcatcaacagcaaaag
cttttgcaggaacgacaacaatcccaagctcggcaagtgcttcttgaacagttgcttcat
ggccagatggctgattctggccttgtacaatcacatgttgatcctattagagccaacaat
gttcttgatcaggttttattggagcaacaacttctacatgaactgcaacaacggtctcat
caccctcaaaggcactttgttccatctgtagaacaacttactcaagcaaaatttggtcag
acaccacagcaagatcagcaaagagatttatttgagctattatctcgtgcacagcatggg
caaatgcaatctttagagcatcagattcttcaggaacagctgcaggccagacagttgcct
atgggattgagacagcggatgaatatggaggagagtcatattggttctatgtggcaacag
gttaatgaaaatgatcagttcttcagaagttctgttaatcatagagctcattcttcagga
attagcccattagatttttatcaacggcagcagaggccaccacatgaggatcagttgagc
caccttgagcgaaatctttcatttcaagaccgactgcagcaagggctttttgaacctggc
tcaatgccgtttgagaggtccctgtctttgcctgctggtgtttcagggatgaatatggat
gttgtaaatgctatggttcatgctcatggtttagatatgcaggagttgagcacccgaatg
caatctgctggtcaagtgggaacattgtcttctggtggccacttacataattctcatcac
cctgtggttcctaaccaattccatgtttcacatcttgatgctattgatggccgttggcct
gaaggcaatgggccggtagcaaatgactggatggaatcccgaattcaacaattgcacata
aactctgaatggcagaaaagggagcctgacattaagatgactgctaaagattcaagttta
tggatgtcagatgaattgaatgatgataaatcaaggcaattgttaatggaattgctccat
cagaaatctggtcatccaccttctgatacacttcatatgagtgatggattgtcttttgag
aagaggtcaatgtcaggcctttactctggatcaagctcttcaggtcaccctctttctgtt
atttcagaccgggaagccagtctaaacaactcacttgccataggttcttatggttctaat
tcttgtgaactagctgaggtttcatcagctggtgaacaagccagcagcatgggaagtaca
gaaagagtactatttagatctgaatcaggtgcaaaatgtgagggaattttatcattgtta
ggcgttagtgagactcaggcagttcttggggattctaacttcgttgataagtccgctatc
aatagagagtacctagaggtagaaggaaggaagtatggatccaaaatacagggtacggca
aagagttctgttgctgatgttcataatggcacagctgatcaaacaaggttggctgctatg
gatcatggagaggttccagttcatgctctcagcaggcattcttctcttggtgtttctgga
ttttatgatgacaaaattggacaacaaaattcatatgctgaagatgtcagcttaaatcat
gctccatatggtagggtgactgtactatccaaagggcaagagaacatattgttgagacga
tcacctgtctctcgtgcttcatcatctcaaggactatctgatctggtctctgatacagtt
gtcagggggaaaagttcaagtagtattgaggggggaaatccagtgagccaaactactgat
aatacagcttccggcaagaaagatgtgcattcccgaagaacctcatcttgtggggatgct
gatgtgtcagagccattatttatagacatgcttaaaagtaatgccaagaagaccactgct
tctgaggtccatatgacagcagcagtgtcagaatcatcagatagcacacaaggggcccga
agtggcaaaaagaaaggtaaaaaagggaggcaaatagatcctgctctcctcggttttaaa
gtaacaagcaatcggatcatgatgggtgaaattcaaaggattgaggattaa
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integrated database retrieval system
