Manihot esculenta (cassava): 110630002
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Entry
110630002 CDS
T05761
Name
(RefSeq) autophagy-related protein 13b isoform X1
KO
K08331
autophagy-related protein 13
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
110630002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110630002
03029 Mitochondrial biogenesis [BR:
mesc03029
]
110630002
Membrane trafficking [BR:
mesc04131
]
Autophagy
Autophagosome formation proteins
ULK complex
110630002
Atg1 complex
110630002
Mitochondrial biogenesis [BR:
mesc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
110630002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
110630002
NCBI-ProteinID:
XP_021632968
LinkDB
All DBs
Position
13:complement(15100255..15128726)
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AA seq
654 aa
AA seq
DB search
MSSSNSNTHTEAAKMEQIIAEFFAKSLHIILESRSPAMSSRNYSADQAASSPSSSSSSST
SVRPRDKWFNLALRECPATLENPDIWRRMNLEPMVVDVILVQRPPDRDPANSSLKKDLFR
NPYLKERYPFSWNSDQEELGYDAKTEKIIERWIVQCESRRLRDNGSGSRRSIGTLHTFYK
KLILLLRSLYATVRLLPAHKIFRDLNSSGQIRTFTLTHRVSSFVEPFTRKEETEMQRFGF
NPVDTSCGRLCLSVVYRSSLSDIRSESSTQMSPQFIPDYVGSPLADPLKRIPSLPLSHGS
PSSLPFSRRHSWSYDLYKASPPSVSFSPSPTHSESHASISNPSSRRFPTMNLPPHPPEIS
SVHKKNMSYDEYCPSPNFTPSPSPSPPIYIPGRHLAKALLRSESAPVSIPTGKLSSSPVL
SNKQNLPPSPPLKGTRSGNPRTDTSTGFVQTGASVEKLFSLGKDDTRKYSGMRIPSNSSP
QISFSRSPSRSFPDDFDDPDFPCPFDVEDDDMTDPSSRPESFDQRGVLCDPLEPGGLFPV
RNSQDAAVGALVRMLRKAPPLRQDISTSIDLSQVSRSKISSSSFQEHVQISETPAIQPAS
SSIASSGLVASKTTADALEELRGYKELMRDLLLSQADRSDTSANPTSFQKPATG
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcatctaacagtaatactcacactgaagctgctaaaatggaacaaattatcgct
gaattttttgctaaaagtctccacataatattggagtcgaggtctcctgctatgtcatct
cgtaattacagtgctgatcaagctgcatcgtctccatcttcctcttcgtcctcctctaca
agcgtaaggcctagagataaatggtttaatttagcccttagggaatgcccggctacgctt
gagaatccagatatctggcgtcgtatgaatctggaaccaatggttgttgatgtgattttg
gtgcagagaccacccgatagggaccctgcaaattcttccctgaaaaaggatttgtttagg
aatccttacttgaaggaacgttatccttttagttggaattctgatcaagaagaattagga
tatgatgctaagactgagaaaattatagagagatggatagtgcagtgtgagagtaggagg
ttaagggataatggttctggcagtaggagatcaattggtactttgcatacgttctataag
aaattaatattacttttgaggtctttgtatgcaactgttaggcttcttcctgcacataag
attttccgcgacctcaattcgtctggacagattcgcacatttacccttactcatagggtt
tcttcttttgttgagcccttcactcgcaaggaagagactgaaatgcagcgatttgggttc
aatcctgtggatacttcctgtggtaggctttgcctttcagtagtctatcgttcatcactc
tcagacataaggtctgaatcatcaacccaaatgtccccccaatttatccctgactatgtt
gggagcccattggcagacccactgaaaaggatcccttctcttcctctatcacatggttct
ccatcatccttgccattctcaagacgacatagttggagttatgacctttataaagcttct
ccaccttcagtttctttctcaccatctcctactcattcagaatcacatgcatcaatttct
aatccaagttcccgtcgcttcccaactatgaacttgcctcctcatccacctgaaatatct
tcagttcataagaaaaatatgagctatgatgagtattgtccttcccctaactttacaccc
tccccatcaccatcaccaccaatctacattcctgggcgtcatctggctaaggctctttta
cggtctgaaagtgcacctgttagcatacctacaggcaagctttctagttcccctgtgttg
tccaacaagcaaaatttgcctccatctcctcccctcaaaggtaccagatctggcaatcct
aggactgatacaagcacaggttttgtgcagactggtgcatcagttgagaagttgttctcc
cttggaaaagatgacactagaaagtattcggggatgaggataccatccaacagctctcca
cagatttcattttccagaagtcccagcaggtcttttccagatgattttgatgatcctgac
tttccttgcccatttgatgtagaggatgatgatatgacagatccaagtagcaggcctgaa
tcatttgatcagagaggcgttttgtgtgatccacttgagccaggaggactatttccagtt
agaaattcacaagatgctgctgttggtgctcttgtacgtatgctgaggaaagcacctcct
ctacgccaagacatctccacttcaatcgatttgtcacaagtctctaggtccaaaatatct
agcagcagcttccaagaacatgttcagatatctgagacccctgcaattcagccggcttct
tcaagtattgcatcttcagggcttgttgcatcaaagacaactgctgatgcattggaagaa
cttcggggttacaaagagttgatgagagacttgttgcttagtcaagctgataggtccgac
acgtcagctaatcctacttctttccagaaacctgcaactggttga
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