Manihot esculenta (cassava): 110630124
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Entry
110630124 CDS
T05761
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110630124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110630124
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110630124
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110630124
Complex C
U4/U6.U5 tri-SnRNP related factors
110630124
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Integrase_H2C2
Helicase_C
zf-CCHC
zf-H2C2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110630124
NCBI-ProteinID:
XP_043805259
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All DBs
Position
13:10704804..10714199
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AA seq
555 aa
AA seq
DB search
MEERRDSKGKAVTTTIDKGGRTNPYQKPTGDICYRCRQSGHRSNNCPERRGVNADRRQEN
RLCIPRSSLREKLIREIHGGGLSGHLGRDKTIAGLEERFYWPQLKKDTGRMVQKCPYRMP
DAYDQEGDVNREKRFVVTLQRYSSSLTSFFSLALLQRDPSADEKMNPFAEQETWENYQIG
KATMKFGSKNKKQMSDDYQFVFEDQIEFIKESVMDGDKYDNEMREYEMRDESLDYSRAKS
ALEKLQIGYSIRFEDCTSKKTLLKYMTDGMLLREFLDFAGLLTFSRFISVVMVDEAHERT
LSTDILFGLVKDIARFRPELKLLISSATLDAAKFSDYFDSAPIFKIPGRRFPVEMHYTKA
PEADYLDAAIVTVLQIHVTQSPGDILVFFTGQVEIETAEEILKHRTRGLGTKIAELIIYP
IYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPWTGM
ESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNYNHDLDDNTVPEIQRTNLANVVLS
LKSLGIHDLLNFDFI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaggagagacagtaagggcaaggcagtcaccactacaatagacaaaggaggc
aggaccaatccttaccagaagccaacgggagacatctgttaccggtgcaggcaatctggt
catcgatcaaataattgtccagaacgtagaggagttaatgctgaccgccggcaggagaac
aggttatgcatccctcgatcttccttgcgggagaagttgattcgcgagatccatggagga
ggtttgagtggtcatttggggcgtgacaagactattgctgggttggaggagcgtttttac
tggcctcaattaaaaaaggatacaggtcgaatggttcagaagtgcccatacagaatgcca
gatgcatatgatcaggaaggagatgttaatcgggagaaaagatttgttgtgactttgcag
cgctatagtagtagtttgacttcttttttttcccttgctctcttgcaaagggaccctagt
gctgacgaaaaaatgaatccatttgcagaacaggagacttgggaaaactaccaaattggg
aaagcaacaatgaaatttggttcaaagaataaaaagcaaatgtctgatgattatcagttt
gtctttgaggaccagattgagtttatcaaggaatcggtgatggatggtgacaagtatgat
aatgagatgcgtgagtacgagatgcgtgatgagtccttggattactctagggcaaaatca
gctttggagaagcttcagattggctactccattcgttttgaagactgcacatccaagaag
actcttctaaaatatatgacagatggaatgctcctacgtgaattccttgattttgctggt
ttacttacattctctagatttattagtgtcgtgatggtggatgaagcacatgaaagaact
ttgtctactgatatactttttggactagtaaaggatatagcccgttttcgaccagagtta
aagttgcttatttcaagtgcaacactggatgctgcaaaatttagtgattactttgattca
gctccaatttttaaaattcctggaaggaggtttcctgttgagatgcactatacaaaagca
ccagaagctgattaccttgatgctgcaattgtaactgtgcttcaaatccatgtgactcaa
tcccctggagatattttagttttcttcacaggtcaggtggaaatagagacagcagaggaa
attttgaagcacaggaccagaggtctagggacaaaaattgcagagctcattatctatcct
atatatgcaaatttaccaacagagcttcaagctaaaatatttgaacctacacctgaaggg
gcccggaaggttgtccttgcaacaaatattgctgaaacatctttaacaattgatgggatc
aagtatgtcattgatcctggcttttgcaagatgaaatcatataacccatggacagggatg
gaatcattgcttgtaacacctatttcaaaagcttcagccatgcagcgtgctggtcgctct
ggaagaacaggtccaggaaaatgttttcggttgtacacggcctataactataatcatgat
ttggatgataatactgtaccagaaatacaaaggacaaatcttgctaatgttgtgctctct
ttgaagagtcttggaattcacgacttattaaattttgattttatatag
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