Manihot esculenta (cassava): 110630166
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Entry
110630166 CDS
T05761
Name
(RefSeq) nuclear pore complex protein NUP58
KO
K14307
nucleoporin p58/p45
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110630166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110630166
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110630166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
Motif
Other DBs
NCBI-GeneID:
110630166
NCBI-ProteinID:
XP_021633208
LinkDB
All DBs
Position
13:complement(33865907..33870668)
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AA seq
493 aa
AA seq
DB search
MSFSPFSTPQQQPQSLFQPQPQPFQQSSSLFPQQFQQQQQQQFPQQFQQPQQQQQHNQQQ
LYLFTNDKAPANYSTKWADLHPDSHKVLLQIETRILEYRDESQRLDQCGRLYDSSVSNEG
FELDTGHIVQELGGISTAMERQKAILQELMINVKDMLRNTEMAVRSFMMLQPRFRHPNPG
SASTATAPSQPSGATVRPGSTGQPTSTSIVPVFDFYSGLPKKPSPFLRQTVVRFEKYLCE
CSQWIEELEQLLLLDSDRNSSHPGFSLLQSLPKVMSNVHDFFVHVASKVESIHQYIASMK
TAYLADQRRRGDVNDPFLEADRRETAKQEAAAKRVHPTLNLPANSQPSTQVAGLFASSAT
PGASIVPQASAAPASASSGSGFSLFSTPSTVASSSFSSSSLFATPTSSAPVSSLFGSSGA
SPQASLFSSSSASLLGSASTPSLFSGAATSFSSTTPAGGSLFSTPFASGAVTGSGASFGT
TSKPRPKSRTARR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctccgttttcaactccacaacagcaaccacagtcactatttcagcctcag
cctcagccctttcagcaaagcagctcccttttcccgcaacagtttcagcagcaacagcag
cagcaattcccgcaacagtttcagcagccgcagcagcaacaacagcataaccaacagcaa
ttgtatcttttcaccaatgacaaggctccggcgaattacagcaccaagtgggcagatctg
catccggattcccataaagttctacttcagatagagacgcggatattggagtatagggat
gagagccagaggctagaccagtgtggtcgtctctatgattcctcagtgtccaatgaaggg
tttgagcttgacacaggccacattgttcaggagcttggggggatcagtactgccatggaa
aggcagaaagctatactacaggagctcatgatcaatgttaaggacatgttacgaaacaca
gagatggctgtacgttctttcatgatgctacagcctaggttccgtcatcctaatccagga
agtgcttcaactgccactgcaccatcccagccttctggagcaacagtgaggccaggttct
actggtcaaccaacatctacctccattgttcctgtgtttgatttctacagtgggcttcct
aagaaaccatcaccatttttacggcaaacggtagtcagatttgaaaaatatttgtgtgaa
tgcagccagtggattgaagagttagagcaactgcttctcttagattctgacaggaactct
tctcaccctggattctcattattgcagtctcttccaaaagtcatgtcaaatgtgcatgac
ttttttgttcatgtggcatccaaggtggagagcattcatcagtatattgcttctatgaaa
actgcctatcttgctgatcaacgtcgtcgaggggatgtgaatgatccattccttgaagct
gatcggcgggaaacagcaaaacaagaagctgctgctaaacgggtacatccaactttgaat
ttacctgcaaattcacagccttcaacccaggttgctgggttgtttgcaagctcagcaact
cctggagcatccattgttccacaggcatctgccgcaccagcatcagcttcctcaggcagt
ggattctctctcttcagtacaccttctactgtggcatcttcctctttctcatcatcctct
ctttttgcaacaccaacatcctctgctccagtatcttctttgtttgggtcatctggtgct
tcaccccaagcttcgctttttagctcatcatcagcatcattacttggttctgcatcaact
ccctctttgtttagcggtgctgctacatcatttagttctaccactcctgctggaggttcc
ttattttcaacaccatttgcatcaggtgctgtaacaggatctggagctagcttcgggaca
acatctaaaccaaggccaaaatctcgaactgcccgacgttag
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