Manihot esculenta (cassava): 110630280
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Entry
110630280 CDS
T05761
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110630280
09122 Translation
03013 Nucleocytoplasmic transport
110630280
03015 mRNA surveillance pathway
110630280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110630280
03041 Spliceosome [BR:
mesc03041
]
110630280
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110630280
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110630280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
110630280
NCBI-ProteinID:
XP_021633381
LinkDB
All DBs
Position
13:complement(22808149..22816046)
Genome browser
AA seq
694 aa
AA seq
DB search
MSSKYPTIDNRPIEQWKVTELKEELKRRKLTTKGLKDDLIKRLGEALLIEEENVTKEVDA
DIDLGKHPIDEIKNSDAVPVVSDDDTVDLNVIDAKTENVGDVKVQVDVNDGAEATDQQLS
EGSVQVDVCGGDNSSRSEGELTVPGATLESSTTVSESVAFDVTLGGQDAQNSETRKVNGD
SSPKQDNEDSKTQLDLQDSKSTLDNENSKTQLENEGLKSAHEDVTFDSSAPNKQVSEVNP
NLGFQVKSDSISTDCVSINEKIELKDNIITDNVKLEIDVVKPEIVEPSSNIIVPVGGESH
PLDVEEPQEKKTSVEKEDDNNATNADMCKKNDMVDIGYSEKLNLDRSSGDDSMEEDVVES
KQIDSKYNSDDVGDKSEKRETDVVIKENLVDVVGNRSIGQKEMHVENKTELAVPADKRKL
NDQDAIGRAEPLKRQRRWKTDSLKMPEPQRSSVTPTATPKDAFQPTSSRRNFSRSDSSVS
IDDAPKERVVPPSQRPTTNSLRIENFVRPFTLKAVQELLGKTGKVISFWMDQIKTHCYVS
YSSVEEAVETRNAVYNLQWPPNGGRLLAAEFVDPKEVKIKVEAPQSPAAPITPGATAAPP
LAQPSPRQQVSRQQLPPPPPLPPPPPLSNPPLAKEQLIHQPPLPLPHPEKHDPPIVTLDD
LFRKTKATPRIYYLPLSEEQVAAKLAERGKNARQ
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatacccaactattgacaatcgaccaatagaacagtggaaggttactgag
ttgaaggaagagcttaaaaggcggaaattaactacaaagggcttaaaggatgatttaata
aaacgtttaggcgaagcacttctcattgaggaggaaaatgtcaccaaggaagtggatgct
gatattgatttgggtaaacatcctattgatgagataaaaaattcagatgcagtgccagtt
gtttctgatgatgatacagtggacttgaatgtaattgatgcaaagactgagaatgtgggt
gatgttaaggttcaggttgatgtcaatgatggtgctgaagccacagatcaacaactcagt
gagggtagtgttcaggttgatgtctgtggtggtgataattcttctaggtctgagggggag
ctcacggttcctggagctactttggaaagcagtactacagtttctgagagtgtggcattt
gatgtaacattgggtgggcaagatgcacaaaactctgaaacacggaaagtgaatggggat
tctagtcccaagcaggacaatgaggattccaagactcagctggaccttcaggactcaaaa
tccacgctggacaatgaaaattcaaagacccagctggagaatgagggtttgaagtctgca
cacgaggatgtgacgtttgactcttctgctccaaacaaacaggtatctgaggtcaaccct
aacttagggtttcaagtaaaatctgattctatttctactgattgtgtgtcaattaatgaa
aagattgaactaaaggataatataattactgataatgtcaaattagaaatagatgttgtt
aagccagagatagtggaaccatcatccaatatcattgttccagttggtggtgaatcacat
cccttggatgttgaggagccacaagagaagaagacatctgttgaaaaggaagatgacaac
aatgctacaaatgcagatatgtgcaagaaaaatgatatggtagatattgggtactcggaa
aaattaaatttagacagaagttctggtgacgactctatggaggaagatgttgtggagagt
aagcaaattgattcaaagtataactctgatgatgtgggagacaaaagtgagaaaagagaa
acagatgttgtgattaaggaaaatctcgtggatgttgtggggaacaggtctataggccaa
aaggaaatgcatgttgagaataaaaccgagctggctgtgcctgctgacaaaagaaagctt
aatgatcaagatgctattggaagggctgagcctttaaagaggcaacgcaggtggaaaact
gacagcctcaagatgcctgaaccacaaagatctagtgtaacacctactgctacacctaag
gatgcatttcagcccacatcttctagacgcaacttttctcgatctgactcctcggttagc
attgacgatgcaccgaaggaacgtgttgttccaccatcacaaaggcctacaactaattcc
ctcagaattgagaattttgtgcgtcctttcaccctgaaagctgtccaagaacttctaggc
aaaactggaaaggtcatcagtttctggatggaccaaatcaaaacccactgctatgttagt
tactcctccgttgaagaagctgtagagacaagaaatgctgtgtataacctgcaatggcct
ccaaatggtgggcgacttttagcagccgagtttgttgaccccaaggaagtgaaaataaaa
gtggaggcgcctcagtctccagctgcaccgatcactcctggtgctactgctgctccacct
cttgcacagccctccccccgtcagcaggtttctaggcaacaacttccaccgccacctccc
cttccacctccaccacctctgtctaaccctcctctggctaaggagcagcttattcatcag
cctccactaccactgccacatccagagaaacatgatcctccaattgttaccctggatgac
ctatttcggaagaccaaggcaactccacggatatattatcttccattgtcagaagaacaa
gtggcagcaaaacttgcagaacgtggcaaaaatgccaggcagtag
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