Manihot esculenta (cassava): 110630284
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Entry
110630284 CDS
T05761
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110630284
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
110630284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
PHD
PHD_2
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
110630284
NCBI-ProteinID:
XP_021633388
LinkDB
All DBs
Position
1:29877756..29893754
Genome browser
AA seq
1808 aa
AA seq
DB search
MSYSNSNLTGSASSWSSGPRGIGLSNTIHSEVAPCLPLPSLPVFCGASDPLLRLFDDAAD
SSIRGVWSLNRSEIFAQSARIADLLRETDVSYLNLRDEIRPISVEIVEPLELHEQVLQCN
PVAFEYVTRDKKQISGSTVFESKPIGPSIHVLGQGQRDYTVTQNHQFNPIPNEVASSSRR
PKVKKKGTDDVPPLVQPDPAELQDATIGGFCDMLEDLCGRAEVVSDDRGEAEWFSLPASD
IRMLVNEIMSIRSKKLLHLVPVDIFVRLLRVLDHQIHRAEGLSVDECDHDSDAVSLIFCS
LESIHAALGVMAHNNMPKQLYKEENIERILEFSKHQIMDVMSAYDPSYRALHKPNENVAP
EGDEDEEIETEYGSASKRRRTQKSTKLKKSISNKVSGAVNTILQKLCTVLGLLKDLLLIE
RLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLISGIFYSYAQHRAYIIDEVVQLLWKLP
FSKRAVRAYHLPDEEQRQIQMITALLIQLVHSSANLPDPLREATTGNSILEVSLDASYPT
KCHEAVTETCCLFWTRVLQRFASVKNQDASEMKVMMENLVIDLLTTLNLPEYPASAPILE
VLCVLLLQNAGLKSKDISARSLAIDLLGTIATRLKQDAVICSRNKFWILMELTDGDNVDH
NYPKDGCCVCLGGRAEKTLFMCQGCQRLFHADCMGVREHEAPNRSWQCQICVCKKQLIVL
QSYCKSQSKDNGKKNNSKACDPITKVEIVQQLLLNHLQDSVSADDVHLFVRWFYLCLWFK
DDPKSQQKIMYYLTRLKSKLVVRDAGTTHLNLMRDSAKKITSALGQNSSFCRGFDKILHM
LLASLRENSPVIRAKALRAVSMIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELVG
RHIASHPDVGLKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNASFSEFTTACIEIISRI
SDDESSIQDLVCKTFYEFWFKEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMLRKMPNHQL
LVTVIKRNLALDFFPQSAKAVGINPVSLASVRKRCELMCKCLLERILQVEEMSSEEGEVR
TLPYVLALHAFCVVDATLCAPASDPSQFVVTLQPYLKSQVDNRAVAQLLESIIFIIDSVL
PLIRKLPQSVVEELEQDLKHMIVRHSFLTVVHACIKCLCSLSRVAGKGAAIVEYLIQVFF
KRLDALGTDNKQLVCRSLFCLGLLIRYGNSLLRISSNKNIDVVSNLNLFKKYLRVEDFGI
KVRSLQALGFVLIARPEYMLEKDIGKILEATLSSGSDVRLKMQALQNMYEYLLDAESQMG
TENASNDVNHRPEEGGQSVPVAAGAGDTNICGGIVQLYWDNILGRCLDSNEQVRQTALKI
VEVVLRQGLVHPITCVPYLIALETDPQELNSKLAHHLLMNMNEKYPAFFESRLGDGLQLS
FIFMQSCSVSPENLNLKIQARTAGNLKGKPEGGSLIQARLGVSRIYKLIRGNRVSRNKFM
SSIVRKFDNPSWTNSVIPFLMYCTEVLAMLPFTTPDEPLYLIYAINRIIQVRAGALEANM
KGLILHLSQRNSGKSPHENGVIQHEPGRPVLHHMATMDLNGLIQQEPVPQPDLTPLTSLD
LNGTVQEEPHLFFNSNASREPKMDKSSADSFSITVDDVEKIQVNCLWAIALQLLLKLKRH
LKVVYSLNDARCLAFSPNEPPKPGEVLSRQNIPFDISETSTSAPSTYQDLVQRYQEFKSA
LKEDAVDYTTYTANIKRKRPTPRKTKYGRMNGDGDGDDDDDDADWKGGVRRQGGSGRRGS
YGRAGRQR
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcaaattcaaatctaaccggctcagcttcaagctggagctccggtccacgg
ggcatagggctatccaacacaatacactcggaggtagcgccttgtttgccgctgccttcg
cttccggtgttctgtggcgcatcggatccgctcctccggttattcgacgatgctgctgat
agtagtatcagaggtgtttggtctttgaatcgaagtgaaattttcgctcagtctgctcga
atcgctgatctacttcgggaaacggatgtttcctacctgaaccttagagacgagataagg
ccaatttcagttgaaattgttgagcctttggagctccatgagcaggttcttcaatgcaat
cctgtagcatttgagtatgtaactcgcgataagaagcaaatttctggaagtaccgtattt
gaaagcaagcctattgggccaagtatacatgttttgggtcaaggtcaaagagattatact
gtaactcaaaatcaccagttcaatcccattcctaatgaggttgcatcatcttcaagaaga
ccaaaggtcaagaagaagggcactgatgatgtaccaccattggtacagccagatcctgct
gagcttcaagatgccaccatcgggggcttctgtgacatgctagaggacttgtgtggtaga
gctgaagttgtgagtgatgataggggagaagcagagtggttttcattgcctgcttctgat
attagaatgcttgtgaatgaaataatgtccattcgttcaaaaaaacttctacatttggtt
cctgtagatatttttgtaagactcttacgggttctagatcatcagatacaccgagcagag
ggtttgtctgttgatgaatgtgatcacgattcagacgcagtctccttgatcttttgttcc
ttggaatccattcatgcagctctaggtgtaatggctcataacaacatgccaaagcaactg
tataaagaagagaacattgaaagaattctcgagttctctaagcatcaaataatggatgta
atgtcagcttatgatccatcatatcgcgcattgcataagccaaatgaaaatgtggcacct
gaaggtgatgaagatgaagaaattgagactgaatatggttcagcaagcaagagaaggcgt
actcaaaagagtacaaaactgaagaaatcaatatcaaacaaggtctctggtgctgtgaat
accatactacaaaaactgtgcactgttcttggtttgctgaaggatttgttgttgatagag
aggttatctgatagttgcattctacagctggtcaagacaagcttcactacatttctggtg
gataatatccaactcttgcaattgaaggcaattggtttgattagtgggatattctattca
tatgcacaacaccgagcatatattatcgatgaagttgttcaacttctctggaagttacca
ttttcaaaacgagcagtaagagcctaccacctgcctgatgaagaacagaggcagattcag
atgattactgctttgttaattcaattggttcacagcagtgcaaatcttcctgatcctttg
agggaagcaacaactggtaattctattttagaagtctctttggatgctagttatccaacc
aaatgccatgaagcagtcacggagacatgctgtcttttctggacccgggttcttcagcgc
tttgcatctgtaaagaatcaggatgcttctgaaatgaaagttatgatggaaaatcttgtt
atagatctattaacaactctaaacttacctgaataccctgcatcagctccaatcctggag
gttctttgcgtattgctactccagaatgctgggctgaaatccaaggacatttctgcgcgc
tccttggcgattgatcttcttggtacaattgcaaccagattgaagcaggatgctgtcatt
tgcagcaggaacaaattttggatattaatggaattgactgatggtgataatgttgatcat
aattatcctaaagatggatgttgtgtttgcttaggtggaagagctgagaagacactgttt
atgtgtcaaggttgtcagagattgtttcatgctgattgcatgggagtaagggaacatgag
gctcctaatcggagttggcaatgccagatttgtgtctgcaagaagcaacttattgtgtta
caatcatactgcaaatcacagagcaaggataatgggaagaagaataactctaaagcttgt
gatcccattaccaaagtcgaaattgttcaacagttgctcttgaatcacctccaagattct
gtttctgctgatgatgtgcatctttttgttcgatggttttatttatgcttgtggttcaag
gatgatccaaaatctcaacaaaagatcatgtactaccttactagactcaaatcaaagctt
gtcgtgcgtgatgctgggactacccatttgaatttaatgagggactcagcaaagaagatt
acttcagctctgggacaaaatagttctttctgtagagggtttgataagattcttcatatg
cttctggcaagtttaagggagaactctcctgtaattagggccaaagctttacgagcagtc
agtatgatcgtagaagttgatccggaagtattatgtgacaaacgtgtacagttggctgtt
gaaggaagattctgtgactctgcaatatctgttagagaagcagcactggaacttgttggt
aggcatattgcatcacatcctgatgttggactgaagtattttgagaaagttgctgagagg
ataaaagatacaggagttagcgttcgaaaacgagccatcaaaattatacgagatatgtgc
acctcaaatgctagcttctctgaatttacaactgcttgcattgaaatcatatctcgcatt
agtgatgatgagtcgagtattcaggatctcgtttgcaagacattttatgagttctggttc
aaggaaccatcaggtttgcagacacaatattttggagatggtagttctgtgcccttggag
gtggctaagaagactgagcaaattgttgagatgctgagaaagatgccaaatcatcagctt
cttgtcactgttattaaacgcaacttagcccttgattttttcccacaatcagctaaagct
gttggaattaatcctgtatcacttgcatcagttcgtaagcgctgtgagttaatgtgcaag
tgcttactggaaaggatattgcaggtggaagaaatgagcagcgaggaaggggaagtgcgc
acattaccttatgtgctggcattgcatgcattctgtgttgtggatgctacactttgtgcc
cctgcttctgatccttcccagtttgtggtcacactgcagccatatctcaagagtcaggtt
gataaccgagcagttgctcagttactggagagtataatctttataattgattctgttctt
cctttgatccgaaagttgcctcaaagtgttgttgaagagcttgaacaagatttaaagcac
atgattgttcggcattcatttttaacagttgtccatgcttgcatcaagtgtctttgttct
ttgagtagagtagcaggaaagggtgctgcaattgttgagtatcttattcaggtattcttc
aaacgtctggatgctctgggaactgataacaagcagctagtgtgtcgttctctgttttgt
cttggattgctcattcgctatgggaattctttgctgaggatctctagtaacaaaaatatt
gatgttgtcagcaacctcaacttgtttaaaaagtatcttcgtgtggaggattttggcata
aaagtcagatctttgcaggcgctaggttttgttctaattgctaggccggaatatatgctg
gaaaaggacatagggaaaatattagaggcaactttatcttctggttctgatgttcgtctt
aagatgcaagcattgcaaaacatgtatgaatatcttcttgatgctgaaagccaaatggga
acagaaaatgccagtaacgatgtaaatcatcgtcctgaagaggggggccaaagtgttcct
gttgctgctggtgcaggtgatactaacatctgtgggggtatagttcagttgtactgggat
aatattttgggaagatgtttggattctaatgaacaagttcgccagactgcacttaagatt
gtggaggtagtgctacgtcaaggtctggttcatcctatcacttgtgttccgtaccttata
gcactagaaacggatcctcaggagttgaactcaaagttggcgcatcatttattgatgaat
atgaatgaaaagtatcctgctttttttgaaagccggttgggggatggccttcagctatca
tttatattcatgcagtcttgcagtgtttctcctgaaaatctaaacctaaaaatccaagct
agaactgctggaaatttgaagggaaaacctgaaggcggttcgctcattcaagcaaggctt
ggagtttcccggatttacaagcttattcgtggaaaccgtgtttcaaggaacaagtttatg
tcttcaattgtgcgtaaatttgataatccaagctggacaaattcagttattccatttttg
atgtactgcacagaagtacttgcaatgctgccgtttacaactcccgatgaaccactttat
ttgatttatgctataaatcggataatccaggttagggccggagcacttgaagcaaatatg
aagggcttaattttacatttgtcacagagaaattctgggaagtcgccccatgaaaatggg
gtaattcagcatgagccagggcggcctgttctccatcatatggcaacaatggatttgaat
gggttaattcaacaagagccagttccacagcctgatttgactcctttgacatcacttgat
ttgaatggaacagttcaggaagagcctcatctgttctttaactctaatgcctctagagag
ccaaagatggataagagctcagctgattctttcagcatcacagtagatgatgtggagaaa
atccaggttaattgtctttgggcaattgcattgcagcttcttttgaaactcaagaggcat
ctaaaagttgtatatagcctgaatgatgctcgctgcctggctttctctccaaacgaaccc
ccaaaaccgggggaagttctatcaaggcagaatattccctttgacatcagtgaaacatca
actagtgcgccatccacgtatcaagatttggtgcagagatatcaggaattcaagagtgct
ttaaaggaagatgcagttgattacaccacttatacagcgaacatcaagaggaagcgccct
acacctagaaagactaaatatgggcgtatgaatggagatggtgacggtgatgatgatgat
gatgatgcagattggaaaggaggggtacggcgacaaggtggtagtggcaggagaggtagc
tatggtagagcaggtagacagcgatga
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integrated database retrieval system
