Manihot esculenta (cassava): 110630338
Help
Entry
110630338 CDS
T05761
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110630338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110630338
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110630338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
110630338
NCBI-ProteinID:
XP_021633475
LinkDB
All DBs
Position
13:complement(4029116..4033536)
Genome browser
AA seq
485 aa
AA seq
DB search
MATLADSFLADLDELSDNDADLIEEDDVDAGNMEEDVDGDMADIETLNYDDLDCVSKLQK
TQRYNDIMQKVEGALEKGSDISNQGLVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRD
KYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKP
LPEEVLQKTIDACDRALALDAAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGL
SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEVFQTTPPALRMRACRLLAAK
STLAARVDSTRGDPSGNTGRALREEICKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYALTDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAA
KVAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSETGTFS
KIKRT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttgctgattctttcctggcggaccttgatgaattatctgataatgatgct
gatcttatcgaggaagatgatgttgatgctggaaacatggaggaagatgttgatggggac
atggcagacattgaaactcttaattatgatgatttagattgtgtgtctaaattgcagaaa
acacagagatacaatgatataatgcagaaagtggaaggtgctctggagaagggttctgat
atctcaaatcagggtttggtactagaagatgatcctgaatatcagcttattgtggattgc
aatgccttgtcggttgacattgagaatgaaataattataatccacaattttatccgtgac
aagtaccggctgaaatttcctgagcttgaatcacttgttcaccatcctattgattatgca
cgtgtggtaaagaagataggaaatgagatggatttaacccttgtagacctagaagggctt
ttaccctcagctattattatggtggtctcagtgacagcatcaacaacaagtggcaagccc
cttcctgaggaagtccttcaaaagacaattgatgcatgtgatagagctcttgctcttgat
gctgcaaagaaaaaagtccttgattttgtagagagcagaatgggatacattgcaccaaat
ctttctgctattgttgggagtgctgttgcagcaaagcttatgggaacggctggtggcctt
tcagcattagccaagatgcctgcttgtaatgttcagcttcttggtgccaagaagaagaac
ctggcaggattttccacagcaacatctcaatttcgtgtaggttatattgaacaaacagag
gtatttcagaccaccccacctgctctgagaatgcgtgcttgccgactattggctgcaaag
tcaacactagcagcacgggtagattctaccaggggggatccatcaggaaacactggaaga
gctcttcgggaagagatttgtaagaaaatagagaagtggcaagagcctcctcctgcaaag
caacctaaaccacttccagttcctgattctgagcccaagaaaaagagaggtggtcggaga
ctgagaaagatgaaggaaaggtatgctttgacagacatgaggaagcttgccaacaggatg
caatttggtgtgcctgaagagagctctttaggtgatggacttggggaaggttatggaatg
cttggtcaagctggaagtggcaagctgcgtgtatctgttggtcagagcaagctcgctgca
aaagttgctaagaaattcaaggagaagagttatggaagtagtggtgctacatctggtctg
acatcgagtctcgcatttacacctgtgcagggaattgaactcacaaatccacaagcacat
gcgcaccaacttggcagtggaacccagagtacctacttttctgagacaggaacattttct
aagatcaaaaggacataa
DBGET
integrated database retrieval system
