Manihot esculenta (cassava): 110630408
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Entry
110630408 CDS
T05761
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X2
KO
K10683
BRCA1-associated RING domain protein 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110630408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110630408
04121 Ubiquitin system [BR:
mesc04121
]
110630408
03036 Chromosome and associated proteins [BR:
mesc03036
]
110630408
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110630408
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110630408
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110630408
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110630408
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110630408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-C3HC4_3
zf-RING_5
Prok-RING_4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_10
PHD_NSD
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
110630408
NCBI-ProteinID:
XP_021633590
LinkDB
All DBs
Position
13:complement(4514238..4521506)
Genome browser
AA seq
777 aa
AA seq
DB search
MKRKNFHPYTCTHLTPPSIHLISTSFNTSSEKRNSTVKIIRFNLDFGVPSFVFDVSMADT
TKETSVRSMNPWLLHLQKLGLELKCSLCLNFLKRPLLLSCDHLFCNACLPGTMQFGLECP
LCKAQYLDRDLRPVPFIENMVTIYRNLEATICASFQSGASDTGRILEQCPTSISADYNDK
LSKESFKTAVEGNPSNGTSMFLLASSNLAQVPLNSCVKNVVQKIDMADKSNVPRKVKDNE
YEMVGIREDEVDGEQNVNSRPASSHIRAGGLQESTTVQIDANQVDQLSASFGDIKTPEND
SYYEGGDNSPKNHLPLRLVKRNPDDSTRQERYDSSASGTEGGDRRDSKRHKKLSYGPLTI
CTNSVDHITVSSQAENLGNCYSLSEDKSVPPCNGAAKTICGFCRSSRISKDTGPIFHFVN
GKSVEGDDAFLSNAIHVHWACIEWAPRVFFVGETIKNLKTELARSAKLKCSSCGMRGAAL
GCYKKSCRRSYHAPCAKGVAGCRWDFDNFLVLCPSHTSVRFPERKPKKHNLDCHVPTQIA
PQQSNFLSESLNRAKEWVFCGSALSSEEKCLLVEFGSMIGVPVTKFWRPNVTHVIAAADT
EGACTRTLKVLMAILNGRWVLTIDWVKACMKSIRPVDEEPYEVSLDNHGCYNGPRTGRLS
VWGKAPKLFNGLKFYFAGDFASDYKEDLQNLVVAAGGTILEREEELVEQTNAQAAPSRTI
VVYNLDPPQGCKLGEEASILWRRLNEAENIAAKIGSQIIDHTWVLESIASYKLQLDL
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcaaaaatttccatccgtacacgtgtactcatcttacccctccatcaatccac
ctcatcagtacatcctttaatactagtagtgaaaaacgcaactccaccgtcaaaatcatt
cgctttaatttggattttggcgttccgagcttcgtttttgatgtttcaatggcggatacg
actaaagagaccagtgtcaggtcaatgaacccatggcttctccatcttcagaaattgggt
ctcgagctcaaatgctctttatgtttaaactttctgaagcgaccactcttgctttcttgt
gatcaccttttctgcaatgcatgcctgcccggtacaatgcagtttggcctggagtgccct
ctctgtaaagctcaataccttgatcgggacttgaggcccgtgcctttcattgaaaacatg
gtaacaatttatagaaatttggaggctactatctgtgccagtttccagtccggtgcatct
gatactgggagaattttagagcaatgcccaacttcaataagtgcagattacaatgataag
ttgagtaaggagtcatttaaaactgctgtagagggtaatccgagcaatggaacttccatg
tttctgctggcaagcagtaacttagctcaagttcctctcaatagctgtgtcaaaaatgtg
gttcaaaagattgacatggcagacaaaagcaatgtgccaagaaaagttaaagataacgaa
tatgaaatggttggcattagagaggatgaagttgatggagagcagaatgtcaattctcga
ccagcaagttcccatataagagctggagggcttcaagagagtacaactgtgcaaatagac
gcaaatcaggtggatcagctgtcagcttcatttggtgatattaagactccagaaaatgac
agctattatgagggtggtgataatagtccaaaaaatcatctaccattgagattggtcaag
cgaaatcctgatgatagcacgagacaggagaggtatgacagttctgcctccggaactgag
ggaggtgacagaagggactcaaagagacataagaagttgagctatggcccattgactata
tgcacaaacagtgtggatcatattacagttagttctcaagctgaaaatttggggaattgt
tactctctatcagaagataaatctgtgccaccttgtaatggtgcagcgaaaacaatatgt
ggattttgtcggtcctctagaatctcaaaggacaccggtccgatattccactttgtcaat
ggaaagtcagtggagggggatgatgcatttctatccaatgccatacatgttcactgggca
tgtattgaatgggcaccacgagttttttttgttggtgaaactattaagaatctgaagaca
gagttggctaggagtgcaaaactaaagtgtagcagctgtgggatgaggggagcagctcta
ggctgctataaaaaatcttgcaggagaagctatcatgcaccctgtgcaaagggagttgct
ggttgccggtgggattttgataacttccttgtgctttgtccatctcatacttcagtcaga
tttcctgaaagaaagcctaagaaacacaacttggactgtcatgtgccaactcaaatagcc
ccacaacagtctaactttctgtcagaatcactgaatagagcaaaagaatgggttttttgt
ggatctgctttgtcttctgaggagaagtgtcttttggttgagtttgggagcatgattggt
gtgcctgtaaccaaattctggaggcctaatgttacacatgtcattgcagccgcagataca
gagggcgcatgcaccaggacattgaaagttctcatggcaattttgaatgggagatgggtc
cttacaattgattgggtgaaggcatgcatgaaatctatccgtcctgtggatgaagaacct
tatgaagttagtcttgacaaccatgggtgctacaatggccccagaactggcaggctgagt
gtatggggcaaggcacccaaacttttcaatggcttgaaattctattttgctggtgacttt
gcatctgattacaaggaagatctccagaatttggttgtagctgcaggaggtactattttg
gagagagaggaggaactagtggaacaaactaatgcacaggcagctccatcaagaacgata
gttgtctacaaccttgatcccccacaaggatgcaagttaggagaagaagcttcaattctc
tggcggagactaaatgaagctgagaatatagccgctaaaatcggatcccagatcattgat
catacatgggtattggaatcaattgcttcatataagttgcagctcgatctttga
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