Manihot esculenta (cassava): 110630485
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Entry
110630485 CDS
T05761
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110630485
04120 Ubiquitin mediated proteolysis
110630485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110630485
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110630485
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
U-box type E3
110630485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
110630485
NCBI-ProteinID:
XP_021633698
LinkDB
All DBs
Position
1:30058621..30066451
Genome browser
AA seq
1027 aa
AA seq
DB search
MASSNKPQRSLEEIEDIILRKIMLVSLTDSMVADSRIIYLEMTAAEILSEGKDLKMNRDL
VERVLIDRLSGQFPGVEPPFEYLLGCYRRATEEEKKIANMKDKNVKLELESSIKQAKKLF
ISYCRIHLGNPDMFPFNSDPKKPNVSPLLPLIFAAVDGFNSGGTLPPPPRFLEDLFQEGD
FDSLDPILKGLYEDLRGNVIKVSVLGNFQQPLRALLFLLTFPVGVKSLVNHPWWIPKGAY
LNGRVIEMTSILGPFFHVSALPDHTIFKSEPDVGQQCFSEVSTRRPADLLSSFTTIKTLM
NNLYDDLEKVLLTLLRNSDTRENVLQYLAEVINRNSSRAHIQVDPISCASSGMFVNLSAV
MLRLCEPFLDPNLTKRDKIDPKYVFYSNRLDIRGLTALHASSEEVTEWINKENPGKAVVS
AHSSDGESRLLQSQEATSSGSGAYNPASSSGKQAKYTFICECFFMTARVLNLGLLKAFSD
FKHLVQDISRCEDTLSTLKAMQEQSPSPQLQLDIARLEKDLELYSQEKLCYEAQILRDEA
LIQRALSFYRLMVVWLVGLVGGFKMPLPPACSMEFASLPEHFVEDAMELLIFASRIPKAL
DGVLLDDFMNFVIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLE
YLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV
YLNFLNFLINDSIFLLDESLNKILELKELEAEMSNTTEWERRPAQERQERTRLFHSQENI
IRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPE
KYEFRPKQLLKQIVHVYVHLARGDTENIFPAAISKDGRSYNEQLFSAAADVLRRIGEDGR
IIQEFIELGARAKVAASEAMDTEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVI
QRHLLSDTTDPFNRSHLTVDMLIPNVELKVRIEEFIRSQELKRHGDDFSMQSSKATIQRT
TGDMLID
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctctaataagccccaaagatccctggaggaaatcgaggacataatcctccgc
aaaatcatgctagtctccctcaccgactccatggttgcggattctcgaatcatctacttg
gagatgaccgcagcggagatccttagtgaagggaaagacttgaagatgaatcgcgacttg
gtggaacgcgttctgattgatcgcttatcgggacaatttcccggagtcgagcctccgttc
gagtacctccttggctgctatcgccgcgctacggaagaggagaagaaaattgctaatatg
aaggacaaaaatgtcaaattggaattggaatcttcaattaagcaagccaagaagttgttc
atttcctattgtagaattcatttagggaatccggacatgttcccttttaattctgatcct
aaaaaacccaatgtctccccgcttctgcctctcattttcgctgcggtagatgggtttaac
agcggcggaacactgccgccgcctccgaggtttttggaggatttgtttcaggaaggggat
tttgatagcttggacccaatattgaaggggctttacgaggatttgagagggaatgttata
aaggtatcagtgctggggaattttcagcagccgttaagggcgttgttgtttctacttact
tttcctgtgggtgttaagtcccttgtgaatcatccgtggtggattcctaaaggggcttat
ttaaatgggagagttatcgaaatgaccagtattttaggccccttttttcatgttagtgca
ttgcctgatcacaccattttcaagagcgagccagacgttggacagcagtgcttctctgaa
gtatcgactcgtcgaccagctgatttgttatcttcattcaccacaatcaagactcttatg
aataacctatatgatgatctagaaaaggttctcctcactttgcttagaaacagtgatacc
cgtgaaaatgttcttcagtatcttgctgaggtgatcaatagaaattcatcaagagcccat
atacaggttgatcctatatcttgtgcaagttcaggcatgtttgttaatctaagtgctgtc
atgcttcgactttgtgaaccatttttggatccaaatttgacaaaaagagataagattgat
ccaaaatatgtgttctatagtaatcgtttggatataagagggttgacggctctacatgca
tcatcagaagaagttactgagtggattaataaagaaaatcctggtaaagcagttgtgtct
gctcattctagtgatggtgaaagtcgcttgcttcaatctcaagaagccaccagttctggt
agtggtgcttataaccctgcatcaagtagtggtaaacaggctaaatacacatttatttgt
gaatgcttctttatgactgcaagagtgctcaacttgggtcttttgaaagcattttcagac
tttaagcatctagttcaggacatttcaaggtgtgaagacactctctccacgttgaaagct
atgcaagagcagtcaccttctccacaactgcagctggatattgctcgccttgagaaagat
ttagagttgtattcacaggaaaagctctgctatgaagctcagatactaagggatgaagca
cttattcagcgtgcactttctttctaccggttaatggtggtttggttggttggtctggtt
ggtggatttaaaatgcctctgccaccagcatgctctatggagtttgcatccttgcctgaa
cattttgtggaagatgccatggagttgcttatatttgcttcccgaattccaaaagctttg
gatggggtcttgttggatgattttatgaacttcgttatcatgttcatggcaagtccaacg
tacattagaaacccttatctaagagcaaagatggttgaagtattgaactgctggatgcct
cgtagaagtggttcatctgctacagctactctgtttgaagggcatcaattgtcccttgag
tatcttgtcaggaacctcttgaagctttatgttgacattgagtttactggttctcacacc
cagttttatgacaagtttaacatccgacataatattgcagaacttcttgagtacctatgg
caggtccctagtcatcgaaatgcttggagacagattgctaaggaagaggaaaagggtgtc
tatctgaatttcttaaacttcctgataaacgatagcatctttcttcttgatgaaagtctg
aacaaaattcttgaactgaaagagttggaagctgagatgtcaaacactacagaatgggag
cggagaccagctcaagagaggcaggagaggacccgtcttttccattcccaagagaatatc
atccgaattgatatgaaattggcaaatgaagatgtgagcatgctagcatttacatcagag
caaattactgcaccttttctacttcctgagatggttgaaagagtggccagcatgctcaat
tacttcttgttacaacttgtaggtccccaaagaaaatctctaagtctcaaggacccagaa
aagtatgaattccgcccaaagcagttgcttaaacagattgtccatgtttatgttcatctg
gcaaggggtgatacagaaaacatattcccagctgctatctctaaggatggtcgatcatac
aatgagcagttatttagtgctgcagctgatgtacttaggaggattggtgaagacggaaga
attatacaggaattcattgagcttggtgcgagagccaaagtggcagcttctgaggcaatg
gatactgaagctgcccttggagagataccagatgaattccttgacccaattcaatacact
ttgatgaaggatccagtgattttaccttcctcaagaatcacggtagacaggcctgtcatt
caaaggcatcttcttagtgacactactgatccattcaaccgctcccatctcaccgtggat
atgctgattccaaatgttgagctgaaggtgagaattgaggaattcattagatcccaagaa
ttaaaaaggcacggagatgacttcagcatgcagagctctaaagcgacaatacaaaggaca
actggagacatgttaattgactag
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