Manihot esculenta (cassava): 110630542
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Entry
110630542 CDS
T05761
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Module
mesc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110630542
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
110630542
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
110630542
NCBI-ProteinID:
XP_021633769
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Position
13:complement(3614081..3617360)
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AA seq
465 aa
AA seq
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MRRNKSISLLLFIFVTITAFTMFSIIVEARKQHSKKTKPNKHRKDSPTIPGPAPAPLPQR
GSCPSQSSIFNILSFGAKGDGGSDDSKALLSAWKAACEVPGATVEIPAEFKFLIKPITLQ
GPCMPHLVLQIDGTLLAPPEVGSWPKSSLFQWLNFKWVHNFTIQGSGTVNGQGFDWWTPF
NVFFIQKTSKHIPDMKPTALRFYASYNVTVQDIEIVNSPQCHLKFDNSKGIKVNNITISS
PEDSPNTDGIHLQNTQDVEIQHSNIGSGDDCISIQTGCSNIHVHHINCGPGHGISVGGLG
KEKSVACVSNVIVENVWLQNTLAGSRIKTWQGGIGLVKNITFSNIQVSNVKYPIIIDQFY
CDKHICKNQTEAVAISGVRYDQIIGSYTTQPIYLACSSTVPCMDVDLINIQLKPSPEYRS
FKQALCWNSYGKSQAPLVPSSIDYCLRRDGRSVKRTSRSSHEHMC
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaaacaagagtatatctcttctacttttcatattcgttacaattactgccttc
actatgttttcaatcattgttgaggcaagaaagcaacacagcaagaagaccaaacccaat
aaacatcgaaaagattcacccactattccaggtccggcaccggcccctcttcctcaacgt
ggttcctgtcctagccaatccagcattttcaatattttgtcatttggagccaagggtgac
ggaggttccgatgattctaaggcccttctctctgcatggaaagcagcctgtgaagtccct
ggagctacagtggaaatcccagcagaattcaagttccttatcaagcccataactcttcag
ggtccatgcatgcctcaccttgtccttcagattgatgggactctgttggctcctccagaa
gtgggttcatggcctaaatctagcctgtttcaatggcttaactttaagtgggtgcataac
ttcaccattcaaggtagtggcactgtcaatggtcaaggctttgattggtggactcccttt
aatgtcttttttattcagaagacatccaagcacattcctgatatgaaaccaaccgctttg
agattttatgccagctataatgtcacagtgcaagacattgaaattgtaaatagcccacaa
tgccatttgaaatttgacaattcaaaggggatcaaggttaacaatatcaccatttcttca
cctgaggatagcccaaatactgatggaattcacctgcagaacacacaagatgtagaaatt
cagcattctaacattggatccggagatgactgtatctccatacaaactggttgctccaat
atccatgttcatcatattaactgtggaccaggacatggcataagtgtaggaggacttggg
aaggagaagagtgttgcatgcgtctccaacgtcattgtggagaatgtctggctgcaaaat
actttagctggatctagaataaagacatggcagggagggattggattggttaaaaacata
acattttccaacatccaagtatcaaacgtaaaatatccaataataatagatcaattctac
tgtgacaagcacatctgcaagaatcaaacagaagctgtggcaatttctggggttagatat
gatcaaataattgggagttacacaacgcaacctatttatttagcttgcagcagtacagtg
ccatgcatggatgttgatctaatcaatattcagctgaaaccctcgccagaatacagaagt
ttcaagcaggctttgtgttggaactcttatgggaaatcgcaggcacctcttgttccttca
agtatagattactgcttgagaagagatggtcgctctgttaagagaacatcgaggtcttca
cacgagcatatgtgctag
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