Manihot esculenta (cassava): 110630824
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Entry
110630824 CDS
T05761
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110630824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110630824
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
110630824
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110630824
Multi subunit type E3
ERAD complex
110630824
LMBR1L-GP78-UBAC2 complex
110630824
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
CUE
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_11
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4_3
E3_UbLigase_EDD
zf-RING_16
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-C3HC4_4
PHD
zf-HC5HC2H
RINGv
FAR1_N
U-box_ZFPL1
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
110630824
NCBI-ProteinID:
XP_021634112
LinkDB
All DBs
Position
14:complement(3139823..3147222)
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AA seq
631 aa
AA seq
DB search
MGVGYLAISAVSTALSFVGLQCWTELSVDKLKSDGLIISENFISLDNANRALELLLDSYA
TTGMLANFLFNAFILLNLCLKTIFFVELYPAEARKLMERLINYVVYKGTFLPLVIPATIF
QVGLWSIWLIVLCSLKMFQALARDRLERLNASPSAMPWTYFRVYSALLLVLSVDFFWIRL
CLVIYKTLNSSIFLLLFFEPFSIAFETMQAMLVHGFQLLDIWLYHSTGNSTNCQRLKFFD
AVAAVQVNLQLVQSKLGSTGTYLRVCRSIMPFKAAFCMHCVVASKPLLQSSLSEWKSILI
RNLGFSLDMATLLMALGHYMHIWWLHGVALHLVDAVLFLNIRALLSAIIKRVRGYAKLRT
ALGALHAALPDATSEELRAYDDECAICREPMAKAKKLYCRHLFHLACLRSWLDQGLNELY
SCPTCRKPLFIGRPDNEANHHGGDILTDEQLARQLSERLDQQTPPILPAGVFPNQTRASI
EGSPWRTAGLDSSWLHAWPGQGVDGAGPSTAVRSVGLGRVQMMMRHLASVGETYAQTALE
DAAWTLWPMDPAQAVASGSSVTPTTVGRSGGGSGGLHIRTATRSASDNIVNMLAMVETVR
EVLPHIPDEVILQDLQRTNSVTVTVNNLLQM
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggttatttagcaatttcagcagtgtccacagctctgagctttgtgggtcta
caatgttggacagaactgtcggtggacaaactaaaatcagatggcttaataattagtgaa
aattttattagcctagacaatgccaaccgtgctcttgagttgctgctggattcttatgcc
actactggaatgttggcaaattttttatttaatgcattcattctactcaatctttgtctt
aagactattttctttgtggaattataccctgctgaagctcgaaaactgatggaacgtctt
attaattatgttgtttacaagggaacgtttctgccattggtgattccagcaacaatattt
caagtaggcttgtggtcgatctggttgattgttctttgttctttaaagatgtttcaagct
ttggcaagagatagacttgaacgtctgaatgcatctccttctgcaatgccatggacttat
tttcgtgtgtattcagcactgttattggtcctttcagttgacttcttctggattaggctg
tgtttggtgatatacaaaacattgaattcatccatttttctgctattgttctttgagccc
ttcagtattgcatttgagactatgcaggcaatgttggtacatggatttcagttgcttgat
atttggctttatcattctacagggaatagcacaaattgtcaaaggctcaaattttttgat
gcagtagctgcagtgcaagtaaacctgcagttggtgcaatccaaacttgggtctactggc
acctatttgcgcgtgtgtagatcaattatgccattcaaagctgctttctgcatgcactgt
gttgtggccagcaaacccttgcttcaaagttcattgtctgaatggaaaagcattcttatc
cggaacttaggattttcccttgacatggcaactttgttaatggcacttggtcattacatg
catatatggtggcttcatggcgtggcacttcatctagtggatgcagtcctttttttgaat
atacgtgccttgcttagtgcgattataaagcgtgtaagaggatatgctaaactaagaaca
gctttaggtgctcttcatgctgcacttccagatgcaacatctgaagagctacgagcatat
gatgatgaatgtgctatctgcagggaacctatggctaaggcaaagaagctatattgcaga
cacctttttcatcttgcatgcttgagatcctggttggatcagggtttaaatgaattgtat
tcatgtcccacttgccgaaagccactttttataggcagacctgacaatgaagcaaatcat
catggtggagacattttaactgatgaacagcttgctcgtcaattaagtgaaaggcttgat
cagcaaacaccacctattctacctgctggtgtattcccaaatcagactcgtgcttccata
gaaggcagcccttggagaacagcaggtttagattcaagttggctgcacgcttggcctggc
cagggagtagatggagctggtccctctactgctgtgagatcagtgggacttgggagagtt
caaatgatgatgagacatcttgcatctgttggagaaacctatgcgcagactgcccttgag
gatgctgcttggactctgtggcccatggatcctgctcaagctgttgcatctgggtcttct
gtcactcctaccactgttggaagatcaggtggaggttctggaggcttacacataaggact
gccacacgctctgcaagtgacaatatagtaaacatgcttgccatggttgagacagtacgg
gaagttttgcctcacattccagatgaggtgatacttcaggacttgcagcgaacaaattct
gtgacagttactgtgaacaatcttctccagatgtga
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