Manihot esculenta (cassava): 110630851
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Entry
110630851 CDS
T05761
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110630851
Transcription machinery [BR:
mesc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
110630851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
HTH_11
Motif
Other DBs
NCBI-GeneID:
110630851
NCBI-ProteinID:
XP_021634155
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Position
14:complement(1899929..1903973)
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AA seq
501 aa
AA seq
DB search
MGVVTASSSVARTPLGLSTKFSNYKSTVKIPLIVAFKEDKSNNAALIAQGEQIPLPIETP
KGKKRRGKTTNQVPSTTLEVDYNEAAAKLENLYKLSPVTDTSDVDVNGLIGKGPRRKRKI
GEGKRKAANGTGKIVIRNPAKKAKRLNLDTRIAMRKNKEEEMVTPIRKKTDARDGIKKVE
ELVREYSVSTDFISMDWKKMKIPPVLSSTEHAWLFKLMQPMKALLQVKDYLQENMGREPT
ECELAKATNMNVEQVRKQMEVGQAARNKIIKHNLRLILFVIKKHFHDFANGPRFQDLCQA
GVKGLITAIDRFEPERRFRLSTYSFFWIRHAIIRSMTLASFTRVSFGLETVRVEIQKAKL
ELLVKLQRQPTVEEIIERAGISPERHHEVMRASKPVFSLHSRHAITQEEFISGITDVDGG
DKRRQLALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYE
VKALMKLKHPARLDYLRRYVV
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtaactgcttccagctcagttgctcgcacaccactaggattgagcacaaaa
ttttcaaattacaaatccacagtgaaaataccattgattgtggcatttaaagaagataaa
tccaataacgcagccttgattgcacaaggtgagcaaatcccattgcctatagagacaccc
aaagggaagaagagaagaggaaaaactaccaatcaagtgccttcaaccacattggaagtg
gattacaatgaagctgccgccaagcttgaaaacttatacaagcttagccctgtaactgat
acttctgatgtagatgtaaatggcttgattgggaaaggtccacgaaggaaaaggaaaatt
ggtgaaggtaaaaggaaagcagcaaatggaactggtaaaatcgttattaggaaccctgca
aagaaagctaaacgactgaatcttgatacaagaattgcaatgaggaagaacaaggaagag
gaaatggtaactccaattaggaagaaaacggatgctagggacggaattaaaaaggttgag
gaacttgtgagggagtattctgtttcaactgatttcatcagcatggactggaaaaaaatg
aagatacctccagttctctcttcaacagagcatgcctggttgttcaagttaatgcaaccc
atgaaagcactccttcaagtgaaagactatttgcaagaaaatatgggaagagaaccaaca
gaatgtgaattagctaaggcaacaaatatgaatgtggagcaagtacggaaacagatggaa
gttggtcaagctgcgagaaacaagataatcaagcacaatctccggctcatactctttgta
atcaagaaacattttcatgactttgcaaatggcccaagatttcaagatctttgtcaagca
ggggtaaagggacttattacagcaattgatcgctttgaacccgagaggagatttcggctt
tccacatatagttttttttggattagacatgccataatacgatcaatgacgctcgcaagc
tttacacgtgtttcgtttggccttgaaacggtaagagtggagatccagaaagccaaactt
gagctgttggttaagcttcaaaggcaaccaacagtggaagagattattgagagggcgggg
atatcccctgagaggcatcatgaagtaatgagggcttcaaaacctgttttctctctacat
tcaagacatgcaattacccaagaagagttcattagtgggattactgacgttgatggaggt
gataaacggaggcaactagctcttctgaggcttgctctggatgatgtgcttgattctctg
aaaccaaaggagagcctagtgatcaggcagagatatgggctagatggtaaaggtgacaga
acattaggagagattgctggtaacttgaacatatcaagagaaatggttagaaaatatgaa
gttaaggcgctcatgaaactcaagcacccagctagattggattatcttcgccgatatgtt
gtctga
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