Manihot esculenta (cassava): 110631214
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Entry
110631214 CDS
T05761
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110631214
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
110631214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_HPS5
PEP5_VPS11_N
VPS8_N
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_WDR75_2nd
Beta-prop_VPS8
ZipA_C
Motif
Other DBs
NCBI-GeneID:
110631214
NCBI-ProteinID:
XP_021634652
LinkDB
All DBs
Position
14:4490020..4498083
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AA seq
502 aa
AA seq
DB search
MLNFSNTHSIYTHTHLSVSERSESEREIEMENAREALVACSDRSMGTGIAIWDIRTGDRL
LHIPTCASPPHGLLCLGNQFLVASQVNKHGSVGGGAIFTWPFNKPQSPLRSYPIEAIGPI
SCTKDGVYLAGGAPSGNVYIWEVANGRLLKTWRAHHKSLKCMTFSNDDSLLISGSDDGMI
CVWSMVSVLDMENLESSPSLFHYLEHRSSVSGLLTTSSANSTLISSSLDGTCKAWDLVSG
RLIQTQEHPLGINAIILHPAEKFLFGGSTDGRIFVSVLNIGLVDDPFVVGEDHLVVLEGH
KGSITALAFSTLGLISASEDGTVCLWDAISWVTVRRFNYQKAGAVTNLVVIPHPSLLPST
NHQRGPYQIRVSLLDKCPQPESNSSKGAVVLLRACSPLKDSQTSSEFRINSLDHQIFEME
EEHTPAALQMKLETSVDHRMCATRMTKHVMEMNKHLQSRLLDLMQNRLLWSAEDDSPTAR
KSKKLKIESPSHQGEKLLQSSN
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacttctcaaacacacactccatatatacacatacgcatctctctgtttctgag
agatcagaaagcgagagggagatcgagatggaaaatgcgagagaggctttggtggcttgc
agtgataggagtatggggacagggatagcgatatgggatatacgaactggagatcgtcta
ttgcacattccgacctgtgcctcgcctcctcatgggttattgtgcttgggaaaccagttt
cttgtagcttctcaggttaacaagcatggatctgttggtggcggggctatcttcacctgg
cccttcaacaagccacagtcaccacttcggagctaccccattgaagccattgggccgatt
tcttgcaccaaggatggagtgtatctcgcaggcggcgctccttcaggaaatgtttatatc
tgggaggttgctaatggaagattactcaaaacatggcgggcacatcataagtctttgaag
tgcatgacattttccaatgatgactctcttcttatttcaggttcagatgatggtatgatc
tgtgtgtggtctatggtcagtgtgctggatatggagaatttggaaagctcaccttcattg
tttcactacttggagcataggtcctcagtaagtggtctgttaacaacatccagcgcaaac
tcaactttgatatcaagctcccttgatggtacctgcaaggcttgggacctggtttcaggt
aggcttatacaaactcaagaacatccactagggataaatgcaatcatccttcacccagca
gagaaattcttgtttggtggaagtacagatggaagaatatttgttagtgtgcttaatatt
ggattggtggatgatccttttgttgttggagaagatcacctggtcgtgctggaaggacac
aaaggttccataacagcattggccttcagtacattaggtctgatatcagcatctgaggat
ggtactgtctgcctctgggatgccattagttgggtgactgtacgaagatttaactaccaa
aaagcaggggcagtaactaatcttgtggtgattccacacccttcactgcttccttcaaca
aaccatcaaagaggtccctatcagatccgtgtttctttgcttgataagtgtcctcagcct
gaatcgaactcatccaagggagcagtcgttctccttcgtgcttgttctcctcttaaggac
agtcaaacctcttcggagttcagaatcaattcactggaccaccaaatatttgagatggag
gaagaacatacacctgcagccctgcagatgaagttagaaacaagcgtggaccaccggatg
tgtgctacaagaatgacaaaacatgtcatggaaatgaacaagcatttacagtctcggctg
ctagatttgatgcagaaccgattgttatggagtgctgaagatgattcccccactgcaaga
aagagcaagaagctcaaaattgaaagtccgtcgcaccagggagaaaagctattgcagtcc
tccaattag
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