KEGG   Manihot esculenta (cassava): 122721600
Entry
122721600         CDS       T05761                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    122721600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mesc04121]
    122721600
   03036 Chromosome and associated proteins [BR:mesc03036]
    122721600
Enzymes [BR:mesc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122721600
Ubiquitin system [BR:mesc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122721600
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     122721600
    Noncanonical PRC1 (PRC1.1)
     122721600
    Noncanonical PRC1 (PRC1.3/1.5)
     122721600
    Noncanonical PRC1 (PRC1.6)
     122721600
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_UBOX zf-rbx1 zf-RING_4 zf-C3HC4_5 zf-UDP zf-RING_10 zf-C3HC4_4 Prok-RING_4 Cu-oxidase
Other DBs
NCBI-GeneID: 122721600
NCBI-ProteinID: XP_043805746
LinkDB
Position
13:35960400..35964566
AA seq 377 aa
MLLQSIQSIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRYLRDDPNYDA
LIAALYPDIDKYEEEELAFHEEERIRNKQIQASIAQIFQRQSEALVRRRTMGKETTGPFM
ERSQRNHRTVPSRRRRNSRGTEFQGSEDIDYENDDNGGKDSSSTDERSTEVRQRRRKRRP
GIRPSQPSSSASNPEGGCIENDLEATRENRGISPGLVWNTEMLAWGRGGTRSHTRHGNAS
GCNNKTARSTRISKLVEYLRSLEEKNDELDVHLMLTSMDKESFTNLKQPYLCCQPSLSVK
HLCENIAQKKSLEAEEAEIFLVKGQHNLIDNLSSVHPPISVDELQILKGQETLACLRANC
TSNRDYMILAYRQKGTT
NT seq 1134 nt   +upstreamnt  +downstreamnt
atgctattgcagtcaatacagagtatcataaagaaaacacgaactgtgatggaatgtctg
caccgcttttgcagagaatgcattgacaaatcaatgcgacttgggaataatgagtgccca
gcttgccgcacacactgtgcaagtcggcgttatttgagagatgatccaaattatgatgct
ttaattgctgctttatatccagacattgacaagtatgaggaggaggaattggcttttcat
gaggaggaaaggatacgaaacaagcagatccaagcttcaattgctcaaatatttcaacga
caatctgaagcactagttaggagacgcacaatgggtaaagaaacaactggtccattcatg
gaaaggtcacagcgcaatcatcggacagtcccctcaaggaggcggcggaacagccgaggc
actgaattccaaggatccgaagacatcgattatgaaaatgatgataatggaggtaaggat
tcatcttctaccgatgaacgctccacagaagtaaggcagcgcaggcgcaagagacggcca
ggaattaggccttctcaaccttcttcatcagcttcaaatccagagggcggatgcattgaa
aatgatttagaagccaccagagagaatagaggaatatctcctggccttgtttggaataca
gaaatgcttgcctggggcaggggtggtactcgaagtcatacacggcatggtaatgctagc
ggttgcaacaacaagactgccagaagcactcgcatatccaagctggtagaatatctcagg
agcttagaggaaaaaaatgatgagttggatgttcacctaatgcttacttctatggacaag
gaaagtttcacgaatttgaaacagccctacctttgctgtcaacccagtttgtcagtcaaa
cacctatgtgaaaatattgctcagaaaaagtctttggaagctgaagaagctgaaatattt
ttagttaaagggcagcacaaccttattgacaacctgtcctctgtgcatccaccaatatca
gtggatgagctgcaaattttgaaagggcaggaaactttggcatgtcttagagccaattgc
acttccaatagagattacatgattctagcatataggcagaaggggacgacttag

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