Manihot esculenta (cassava): 122722192
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Entry
122722192 CDS
T05761
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
mesc03440
Homologous recombination
mesc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122722192
03420 Nucleotide excision repair
122722192
03430 Mismatch repair
122722192
03440 Homologous recombination
122722192
03460 Fanconi anemia pathway
122722192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
122722192
03032 DNA replication proteins [BR:
mesc03032
]
122722192
03400 DNA repair and recombination proteins [BR:
mesc03400
]
122722192
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122722192
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122722192
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122722192
MMR (mismatch excision repair)
122722192
DSBR (double strand breaks repair)
HR (homologous recombination)
122722192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
CDC24_OB3
DUF223
zf-CCHC_5
BRCA-2_OB1
NGO_1070-like
Motif
Other DBs
NCBI-GeneID:
122722192
NCBI-ProteinID:
XP_043808273
LinkDB
All DBs
Position
17:complement(2368841..2372410)
Genome browser
AA seq
849 aa
AA seq
DB search
MGMVNLTEGAISKITSGRATAAELKPTLQVTELKQVQTKQPQQSDRFRLVLSDGSHLQQA
MLGTQINHLVKDGHLRPGSVVQLIQYTCTTVQGRMIIIILELIVIVEECALMGHPVSAQK
SLGPPQSSTDQPVNNLANPQSFGSSSLAGGMVENSNLAVASPQNPRMNQLHSSSHSSNFD
SGRQGAPNIPPSHLKAEPVANAGFRNPRPEISQTPSTYSYAPRPAYQQPPPMYSNRGPVA
KNEAPPRIMPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRV
TCFNAVADQFYHQIEAGKVYLISRGNLKPAQKNFNHLRNDLEIFLESTSIIQPCFEDDSA
IPRQQFHFRSITEIEGIDNNSVVDLIGMVTSITPSASIMRKNGTETQKRTLQLKDMSGRS
VELTLWGNFCNAEGQRLQNMCDSGGFPVLAVKSGRVSDFNGKAVGTISTSQLFIDPDFPE
ARRLKEWFEKEGRNMPSLSISREMASVGRTDVQKTVSQIKDERLGTSEKPDWITVSATVI
FIKSDNFCYTACPLMSGDRPCNKKVTNNGDGKWRCEKCDQSMDECDYRYILQFQIQDHTG
ITWVTAFQESAEEIMGISAKDLHFLKYEEQDDERFSKIIRQVLFSKFMFKLKVKEETFSD
EQRVKSTVVRAEKVNYSSQSKFLLEMMEKFNSGNSAPFAPKMEPNYPLSGANNTGFESGG
RQGGPVGSNQGGNSSYAAREFVSLPNEVGHYGNQYSARFPTANYSCNSCGATTHTSSNCP
SIMNAPRQSERGAYVNNTSSMGSGGGGECYKCHQIGHWARDCPGLTAVPPAYGSSGRFGG
ISKPQFSGF
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggggatggtgaatctgacggagggagcgatttcaaagataacgagcggacgggcaacg
gccgcagagttgaagccaacgctgcaggtgacagagctgaagcaggtgcagaccaagcag
ccccaacagagtgaccggttccgcctcgtgctttcagatgggtctcacttacagcaagca
atgctggggactcagattaaccatttggttaaagatggacacttgcgccctggttctgtt
gtccagttgattcagtacacttgtaccaccgttcaaggacgcatgattattatcatcctg
gaattgattgtgatagttgaagaatgtgctctcatgggacatcctgtgtcagcacaaaaa
tctttggggcctccacaatcctccactgatcaaccagttaacaatcttgcaaatcctcaa
tcatttggtagtagttcacttgctggtgggatggttgaaaactcaaatttggctgtggca
tctccccaaaaccctagaatgaatcagttgcatagtagttctcattcaagcaattttgac
tcaggaagacagggggcaccaaatatacctccatctcatctgaaagccgaacctgttgct
aatgcaggctttcgcaaccctagaccagaaatttcacagactcctagcacttattcctat
gcccctcgtccagcatatcaacaaccacctccaatgtactctaatagaggaccagtggct
aagaatgaagctccccctaggataatgccgatttcagcactcaatccatatcaaggtaga
tggacaatcaaggcaagagtgacagcaaaaggagagcttaggcactacaataatccccgt
ggtgatggaaaggtgttctcttttgatcttcttgattctgatggtggagaaattagagta
acctgctttaatgctgtggctgatcaattttatcaccagattgaagctgggaaagtttat
ttgatttccaggggaaatctaaaacctgctcaaaagaatttcaaccaccttcgcaatgat
ttggaaatttttctggagagcacttcaataattcaaccctgttttgaggatgacagtgca
attccaaggcagcaatttcatttccgttccataactgaaattgagggcattgataataac
agtgttgtggatttaattggtatggtaacttctattactccttcagcttcaataatgagg
aaaaatggtacagaaacccagaagagaaccctccagttgaaagatatgtcaggccgaagt
gttgaattaacactatggggaaatttctgcaatgcagagggacaaaggctgcagaatatg
tgtgattctggtggttttcctgttctagctgttaaatctggtagggtgagcgattttaat
gggaaggcagtcgggactatctctaccagtcagctatttattgatcctgattttccagag
gctcggaggctgaaggaatggtttgagaaggaagggagaaacatgccttccctctctatt
tcaagagaaatggcaagtgttggtaggacagatgttcaaaaaactgtttctcaaattaag
gatgagaggctagggacttctgagaagccagattggatcactgtcagtgcaactgtgata
ttcatcaagtctgacaatttctgctatacagcttgccccctcatgtctggtgaccgacca
tgcaacaagaaggtaacaaataatggagatgggaagtggaggtgtgagaagtgcgatcag
tctatggatgaatgtgactacagatacatcctccagtttcaaatacaggatcatactggc
attacatgggtgactgcatttcaagagagtgctgaagagataatgggaatatctgcgaaa
gatctgcacttcttgaaatatgaagaacaagacgatgagaggttttctaaaattattcgg
caggttttgtttagtaaatttatgttcaagttgaaagtgaaggaggagaccttcagtgat
gagcagcgtgtaaaatcaactgtggtaagagcagaaaaggtgaattactcatcccagtcc
aaatttcttctggaaatgatggaaaagttcaactcaggaaattctgctccttttgccccc
aaaatggagccgaattatcctctctctggagcaaacaacactggttttgaaagtggtggt
agacaaggtggaccagtgggatctaatcaaggtgggaacagcagttatgctgctagagaa
tttgtttcactgccaaatgaggtgggtcattatggaaaccagtatagtgctaggtttcct
acagctaattattcttgtaacagctgtggtgctactactcatacctcatcaaattgccct
agtatcatgaatgctcccaggcagtctgagagaggggcctatgtcaataatacatcttct
atgggcagtggtggtggtggtgaatgctacaaatgccatcaaattgggcattgggcaagg
gattgcccagggctgactgctgttcctccggcttatggtagctctgggaggtttgggggc
atatcgaagccacagttcagcggtttctga
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