Manihot esculenta (cassava): 122722415
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Entry
122722415 CDS
T05761
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Module
mesc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122722415
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122722415
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
122722415
NCBI-ProteinID:
XP_043809047
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Position
18:complement(18964086..18966736)
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AA seq
457 aa
AA seq
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MHFEDIMMKNVRNPIIIDQCTAHGISAIQSFRQKLRSPTSPSRILGALQRPQVVVAVRLN
CSSSFPCQKVELADINLTYGGKEGPVTAWVDGQDTRMLLFVFLFFPFSIQSARSLVGFRV
VRVQSAVFDVKNYGGKADGKSDISKALLGAWKEACSAKGSNIVVVPKGTYSIGLTDLNGP
CKGAMELQVQGTLLAPINPSSYAKDSWITFAYIDQFKLSGGGTFDGQGQVAWKQNNCGRN
PKCKRLPVYVLLVPLKTRQSLRFDFITNSVVQDVTSLDSKNFHVNLLGGKNLTFDRFTIT
APGDSVNTDGIHIGHSNGINIINSNIATGDDCISIGGASEQIRITNVRCGHGHGISVGSL
GKTTDEFVSGIFVRNCTFYDTDNGVRIKTWPALHGGMASDMHFEDIMMKNVRNPIIIDQM
YCPWNQCNPKVTRKEMKMKESLNALSVDKSARNMKFL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcgaggatattatgatgaaaaatgtccgcaaccctatcattatagatcaatgt
actgcccatggaatcagtgcaatccaaagcttccgtcaaaagttaagatctccaacgtca
ccttcaagaatattaggggctcttcagcgaccgcaagtagtagtagctgttcgacttaat
tgcagcagcagttttccatgccagaaggtcgagctcgctgacattaacttgacgtacgga
ggaaaggaaggccctgttactgcgtgggtagacggccaagatactcgcatgttgctcttt
gtctttttgttttttccattttctattcaatctgctcgctcactcgtcgggtttcgcgtc
gtgcgagttcaatctgccgtatttgatgtgaaaaattatggtggtaaagccgatggcaag
tcagatattagcaaggcattattgggcgcgtggaaagaggcttgttcagcaaagggttcc
aacatagttgtagtacccaaaggaacatattccataggtttaactgacttaaatggtcca
tgcaagggagccatggagcttcaagtccaaggaaccttattggcaccgataaaccctagc
agttatgccaaggacagctggattacttttgcatacattgatcaattcaaattatccggt
ggtggaaccttcgacggacaagggcaagtggcttggaagcaaaataactgcggtcgaaat
ccaaaatgcaagagacttccagtttatgtgcttcttgtccctttaaaaacacgccagagc
ttgcggtttgacttcatcaccaacagcgtagttcaggacgtaacatcgctcgatagtaag
aatttccatgtcaatcttctaggtggcaaaaaccttactttcgatcgcttcacgatcact
gcaccaggagatagcgtcaatacagatggaattcacatcgggcattcaaacgggatcaac
attattaattcaaatattgccaccggcgatgactgcatctccattggtggtgccagcgaa
caaataaggatcacaaacgtacgatgtggacatggacatggcattagcgtgggaagttta
gggaagaccactgatgaatttgtctccggaattttcgtaaggaactgcaccttctatgac
accgacaatggagtgagaattaagacatggccggcattacatggtggcatggcctctgat
atgcatttcgaggatattatgatgaaaaatgtccgcaaccctatcattatagatcaaatg
tactgcccatggaatcagtgcaatccaaaggtaacgcgaaaagaaatgaaaatgaaagag
tctcttaatgcattgtccgtggacaaatctgcccgcaacatgaaatttctgtaa
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