Manihot esculenta (cassava): 122723258
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Entry
122723258 CDS
T05761
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
122723258
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
122723258
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
CarbopepD_reg_2
CarboxypepD_reg
Y_Y_Y
Peptidase_C97
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
122723258
NCBI-ProteinID:
XP_043810974
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Position
3:8467079..8473569
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AA seq
449 aa
AA seq
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MKITKKKRNKEEDHEYEPCWDLRRGSNKEEEEKAKTDSRFRQYGLWERYIDLYPKNDLIY
TVGVSNYAKDWFFAHVNSEWYLNTEYRNGEPWKKVFGPVYVYLNSIPPSENPKALWEDAK
RQMSTEVKSWPYNFPRSEDFPSSDQRGNVVGQLVVRDPYINEKLIDASLAYVGLAAPGAV
GSWQTKVKGYQFWTQADKKGSFSIKNIRAGKYSLYAFVPGFLGDYKYNVDVIIQPGSEIK
LGVLTYDPPRNGTTLWEIGIPDRTASEFYVPDANPTLVNKLYIDSPANKFRQYGLWERYT
DLYPKNDLIYTVGVSNYAKDWFFAHVNRKVGNTAYKATTWQIIFELKSVMQSGSYTLQIA
LASATNSELQVRFNNANVKRPLFTTRLIGKDNAIARYGIHGLYWFYSIQVPASQLLQGKN
TIYLTQTRNGSPFSGIMYDYIRLEAPTKV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcacaaagaagaaacgaaataaagaggaagatcatgagtatgaaccttgttgg
gatcttcgcagaggaagcaataaggaagaagaagaaaaagcaaagaccgatagcagattt
agacaatatggattgtgggaaagatatattgatctataccctaagaatgatctcatatat
accgttggtgttagtaattatgctaaagattggttcttcgcccatgttaacagtgagtgg
tacttaaatacagagtatcgaaatggagagccatggaagaaagtttttggccctgtttac
gtctatcttaattctattccgccttctgaaaatcccaaagccctttgggaagatgctaaa
agacaaatgtcaactgaagttaaaagctggccatataattttcctcgatctgaagatttc
ccttcttctgatcaacggggaaatgtcgtaggtcaattagtagttcgtgacccatacatc
aatgaaaaattgattgatgcaagtttagcttatgtgggattggcagcaccaggtgctgtg
ggctcatggcaaacaaaagtaaagggttaccaattttggactcaagctgacaagaaagga
agtttctcaattaaaaatatcagagctgggaaatatagtttatatgcatttgttcctggt
tttcttggagattacaagtataatgttgatgtcattattcaaccaggatctgagatcaaa
ttgggtgtacttacatatgatcctccaagaaatggtacaactctttgggaaattggcatt
cctgatcgtactgcttctgaattctatgtaccagacgcaaacccaacactcgtcaacaaa
ttgtatattgatagcccagcaaacaaatttagacaatatggattgtgggaaagatatact
gatctataccctaagaatgatctcatatataccgttggtgttagtaattatgctaaagat
tggttcttcgcccatgttaacagaaaagttggaaatacggcatataaggcaactacatgg
cagatcatatttgaacttaaaagtgtaatgcaaagtggaagttacactttgcaaatagcc
ttggcatcagctactaattctgaacttcaggtgaggttcaacaatgccaatgtcaaacga
cctcttttcacaacaaggctaataggcaaggataatgctattgcaagatacggaattcat
ggtttatattggttctatagcattcaagtaccagcttctcaacttctccaaggaaagaat
acaatttatcttactcagactagaaatggaagcccttttagtggtattatgtatgattat
attcgtttagaagcaccgacaaaagtttaa
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