Manihot esculenta (cassava): 122723891
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Entry
122723891 CDS
T05761
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1
KO
K12236
transcriptional repressor NF-X1
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
122723891
04121 Ubiquitin system [BR:
mesc04121
]
122723891
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
122723891
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
122723891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
122723891
NCBI-ProteinID:
XP_043813749
LinkDB
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Position
6:complement(697251..701245)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSFPSRNDHRDRTSRFPNQHARQTWVPRGSGSNAVVNPPSSFGSPPNGIGGGHTNHTSAP
PSPRHSGNSNASRGRKPWPTNHRRDREKERDRSHTHEVKDLKDPNLPQLVQEIKDKLVKG
TVECMICYDMVRRSASIWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKSQGFNWRCPGCQ
SVQLTSLKEIKYVCFCGKRTEPPSDLYLTPHSCGEPCGKPLERRVPGAGENKEDLCPHVC
VLQCHPGPCPPCKAFAPPRVCPCGKKIITTRCSDRMSVLTCGQHCDKLLECWRHRCEKIC
HVGSCDPCQVLVSASCFCKKKVETVLCGDMAVKGEVKAEDGVFSCNLTCKKMLACGNHEC
SNTCHPGPCGDCDLMPGRVKSCYCGKTSLQLERKSCLDPIPNCDQICGKPLACRIHHCKE
VCHAGDCPPCLVLVTQKCRCGSTSRTVECFKTSSENEKFACEKPCGRKKNCGRHRCSERC
CPISNLHNLLTGDWDPHFCQMACGKKLRCGQHSCESLCHTGHCPPCLETIFTDLSCACGR
TSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPIAKECVGGHVVLGNI
PCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDTSSSGIEAGPRASCGQTCGAPRRDCR
HTCTALCHPSSPCPDVRCEFPVTITCSCGRITASVPCDAGGSNSGFNADTVFEASIVQKL
PVPLQPVESTGKKIPLGQRKLVCDDECAKLERKRVLADAFDITPNLEALHFGENSAVTEL
LSDLYRRDPKWVLAVEERCKYLVLGKNRGSINGLKLHVFCPMLKDKRDAVRLIADRWKLA
VYAAGWEPKRFIVVHVTPKSKTPSRVIGVKGTTTLTAPHPPAFDPLVDMDPRLVVSFLDL
PREADISSLVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGSVYQGAVVVLQSG
GASNAPANPWGGTGNTKGGAVAALKPWKKAVVPEHGWREDSWGSEEWSHGSVDVQASAWK
GKEAPITATINRWSALDSESTSRTSATSVRIEDPAKLAANSRMELNPSISTSSELPGGAS
SQAELSEVVDDWEKAYDTENIQ
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagctttccatcccgaaacgatcacagggataggactagtagattccccaaccaacat
gctcgccaaacatgggttcctagaggatctggttctaatgctgttgtgaacccaccatca
agcttcggttcacctccaaatggaattggcggtggacacaccaatcatacatctgctcca
cccagtcctaggcatagtggaaatagcaatgcctctcggggtcgcaagccttggcctact
aatcacaggagagacagggagaaagagagggacaggagccatacacatgaggttaaggac
ttgaaagaccccaatttgccccagctcgtgcaggaaattaaggacaagcttgtgaagggt
actgttgagtgtatgatctgttatgatatggtccggaggtctgcatctatttggtcttgc
tcaagctgttattctatttttcatttgaattgcatcaagaaatgggctcgtgctccaact
tctattgatttgtcagctgagaagagtcaggggtttaattggcgatgcccaggttgtcag
tctgtgcagctcacatccttgaaggagataaagtatgtttgtttttgtggaaagaggact
gaaccaccttctgatttgtatttgacccctcattcctgtggtgaaccatgtggaaagcca
cttgagaggagagttccaggtgcaggtgaaaacaaggaggatctttgtccccatgtttgt
gttctgcaatgccacccaggtccatgccctccttgtaaagcatttgctccaccacgggtg
tgtccttgtgggaagaaaataatcacaacaagatgctctgatcggatgtctgttcttact
tgtggtcaacattgtgataagcttcttgaatgttggcgtcatcgatgtgagaagatatgc
catgtgggttcttgtgatccttgtcaggttttagtctctgcttcatgtttttgcaagaaa
aaagtggagactgtcctatgtggagatatggctgtaaaaggagaggtgaaagctgaagat
ggtgttttctcttgtaatttgacatgcaagaagatgttggcttgtggaaatcatgagtgt
agcaacacttgtcatccaggtccttgtggggattgtgacttgatgccaggcagggtgaag
tcgtgctattgtgggaaaacaagtttgcagttggaaagaaagagttgtttggatcctatt
ccgaattgtgatcaaatatgtggcaaaccccttgcttgcaggatacaccactgtaaggag
gtttgccatgctggggattgtccaccgtgtttggttcttgtcacccaaaaatgccgatgt
ggatcgacttctcgaactgtggaatgcttcaaaacaagttcagagaatgaaaagtttgca
tgtgagaagccttgtggccgaaagaagaattgtgggaggcaccgctgtagtgaaaggtgt
tgtcctatttccaatcttcacaatcttctcactggtgattgggatccgcacttctgtcag
atggcttgtggaaagaaattaaggtgtggacaacattcttgtgagtcattgtgtcatact
ggccattgtccgccttgccttgagacaattttcactgatttgagctgtgcatgtgggaga
acttcaatacctcctcctttgccctgtggcacacctcctccttcatgtcaactcccatgt
tcagttcctcaaccttgtggtcattcagcatctcatagctgccactttggagattgccca
ccttgttctgtccctattgcaaaggagtgtgttggtggacatgttgttcttgggaacatt
ccttgtggatcaaaggatattagatgcaacaaactttgtggtaagactaggcagtgtggt
ctgcatgcatgtggcagaacttgtcacccaccaccttgtgatacttcttcgtctggaatt
gaagcaggtccaagagcttcttgtgggcagacatgtggtgcccctagaagagattgcaga
cacacttgcactgcactttgtcatccttcctctccttgtcctgatgtgagatgtgagttc
cctgtcacaattacttgttcctgtggcaggataacagcatctgttccttgtgatgctgga
gggagcaacagtggttttaatgctgatactgtctttgaagcatccattgtccaaaagttg
cctgtaccacttcagccagtggaatcaactggcaagaaaattccacttggccagaggaag
ctcgtttgtgatgatgaatgtgctaaattggagcgcaaaagggttcttgctgatgcattt
gacatcactccaaacttggaagctcttcattttggtgagaattctgctgtgacagagctg
ctctcagacctatacagacgggatccaaagtgggtgcttgcagtggaggaaaggtgcaag
tacttggtactcggcaagaacagaggatcaattaatggtctcaagcttcatgtgttctgc
cctatgctaaaggataagagagatgcagttaggttgattgctgataggtggaagcttgct
gtttatgctgctggttgggagccaaagcgtttcattgtggtgcatgttacccccaaatcc
aaaacaccatcacgtgtgatcggggttaagggtaccaccactttaaccgctccccatcca
cctgcatttgatcctttagtagacatggatcccaggctagttgtttcttttttagatttg
ccaagggaggcagatataagttcattagtgctcagatttggtggggaatgtgaattagtt
tggttgaatgataagaatgcactggctgtatttaatgatcctgctcgcgcggcaactgcg
atgcgaaggttggatcacggatcagtatatcaaggggcagttgtggttcttcaaagtggt
ggtgcatcaaacgcaccagctaatccttggggagggacagggaataccaaaggtggagca
gtagcagctttgaagccatggaaaaaggctgtagttccggagcatggttggagggaagat
tcatggggcagtgaagagtggtctcatggatctgtagatgtgcaggcttctgcatggaag
ggaaaagaagctcctattactgctacaattaatcggtggagtgccttagattctgaatcg
acttccaggacatctgccacatctgttaggattgaagatcctgcaaaacttgcagctaat
tcaagaatggaattaaatccaagcatttccacttcatctgagctgcctggaggagcttca
agtcaagcagagctgtctgaagttgtggatgattgggagaaagcttatgacactgagaat
atacaatag
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