Manihot esculenta (cassava): 122724057
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Entry
122724057 CDS
T05761
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
122724057
03036 Chromosome and associated proteins [BR:
mesc03036
]
122724057
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122724057
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122724057
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122724057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
122724057
NCBI-ProteinID:
XP_043814353
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All DBs
Position
7:31493241..31503679
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AA seq
776 aa
AA seq
DB search
MTKLFVMGGVECHDSVQQIVSKEYCRFILSFCRKWAYMSQFLEILRCILCCVEDYGDENE
YETFYVNTTREPRVSRSVIPFNFKAIFGSRSSDSVNSVESIYDVSSSFDSNRRYVRIPSH
SPETYSSWLPPSSQTTTRASSSYRPQSLTTDVTSSKPSQASLLSPASQTSSRSSHQAPKL
PLSSKKAQPLIPEIPSSKPSPVSLTSPTSSLKPSPQTPSYSLNPSVSLPKPSTADSKPSP
LSSATSAFSFKPVPKAPPSSLDASLSSSKPSLTSSSNFIKIPDIQSSCSESSPSPSKPLP
SFKPTLAPASSNVTSQQTKANYVWVQKDTLPIYMTPKDIQDLIKKDMVPEVLKKPLTLST
YKDYFAALLYAEDFYIEKWSKFKLVDITLKLQKASVFKLSYFTESHEKENKTFVTFEIDA
CRERRPFLISRDFVFARPSGNTTEPFQGVIYRVVRSTTVLVEFGDDFYAQHHSSRKYDVS
FSFNRVCLKRAHQAIEAASDPLFKDYIFPDCNFRKRCSESTPSYCNYKLDADQMSAVCQI
LSFQGPPPYLIEGPLCVTKATRHEISQLSRTGLVVQEAVLEFYRSSQKHRILICAPNNST
CDLLTRSLKKHIPKSDMFRANAAFREIYGVPTDIRSSCVYKGECFSCPRLQELRKFRVIL
STYVSSFRLCNEGIAAGHFSHIFLVDASSATEPEVMVALANLANKNTAVIVTGAPGNYPG
WVRSDIARENGLMDSYFERLNERNPYARLDPMFITKLVSFESKSDDNQSFDPFFFV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgactaaattatttgtcatgggtggagttgagtgtcatgattctgtgcaacaaattgtg
tcaaaagaatattgtcgttttatactatctttttgcaggaagtgggcctacatgtctcag
tttcttgaaatcttgcgttgtattctttgttgtgttgaagattatggagatgaaaatgaa
tatgaaacattttatgtaaacactacacgggaaccaagagtgtctcgaagtgttattcct
ttcaatttcaaggcaatattcggttcaaggtcaagtgattctgtaaactcagtggaaagc
atttatgatgtgtctagtagttttgatagtaataggagatatgtgcgtataccttcccat
agtccagaaacatattcctcttggctgccaccttcatcccaaactacaacaagagcatct
tcttcgtaccgacctcaatcgctaacgacagatgtgacttcttccaaaccatcacaggca
tcactgctatctcctgcatcccaaacttcgtctagatcatcccatcaggcaccaaaactc
ccactatcttcaaaaaaagcgcaaccattaataccagaaataccttcttctaagccatct
ccagtgtctcttacatccccaacttcttcattaaaaccatcccctcaaacaccttcatat
tctttaaatccatctgtatccctccctaaaccttcaacagctgattctaaaccatctcct
ttgtcctctgcaacttcagcattttcttttaaacctgttcctaaagcacctccttcttcc
ttggacgcttctctatcatcgtccaagccctccctgacttcttcctcaaatttcatcaaa
attcctgatatccaaagctcctgttctgagtcatctccatcaccgtctaagccccttcca
tcttttaagccaacactggctccagcttcctcaaatgtcaccagtcaacagacaaaagcc
aactatgtatgggttcaaaaggatacattacctatttatatgactcccaaggatatacaa
gatttgatcaagaaagacatggtgcctgaagttctgaaaaagccattgactttgtcaacg
tataaggattattttgctgctcttctttatgctgaagacttctacattgagaaatggagc
aagttcaaattggtggatatcacattaaaattgcaaaaagcatcagtctttaaactatca
tacttcacagagagtcatgaaaaggaaaataaaacctttgtgacatttgagattgacgca
tgtcgtgagaggcggccatttctaatatcaagggactttgtctttgcaagaccctcagga
aatacgactgagccatttcagggtgttatttatcgagtggtgaggagcacaactgtgctg
gttgaatttggtgatgatttttatgctcagcatcattcatctcgcaaatatgatgttagc
ttctcatttaacagagtgtgtttaaaaagggctcatcaagcaattgaagctgcctcagat
cctttatttaaagattacattttccctgattgtaacttcagaaagagatgctctgaatca
acaccttcatattgtaattataaacttgatgccgatcaaatgtccgcagtttgtcagatc
ttatcctttcaggggccacctccttatctcattgagggcccactctgtgtaactaaagct
acaaggcatgaaattagtcaactatcaagaactggattggttgtccaagaagctgtgcta
gaattttatcgaagctctcaaaagcaccgaattctcatatgtgcacctaataacagcaca
tgtgatttgttgacaagaagcttgaagaagcacattcctaaatcagatatgtttcgagct
aatgctgcatttcgagagatatatggggtgcctactgatatacgctcgtcatgtgtatat
aaaggtgaatgtttttcttgcccgcgccttcaggaactccggaagtttagagtaatatta
tcaacttatgtgagtagcttccggctttgtaacgaaggcattgctgctggacattttagt
cacattttcttggtggatgcctcatcagctactgagcctgaggtaatggtggcactggct
aatttggcgaacaagaacacagctgtaatagtcactggtgcaccaggaaactatccaggt
tgggtgcgctctgatatcgctagagaaaatggactaatggattcatacttcgaaagactt
aatgagagaaatccatacgctagacttgatccaatgtttatcacaaagctggtcagcttc
gagtccaaatcagatgataaccaaagctttgaccctttcttctttgtgtag
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