Manihot esculenta (cassava): 6000056
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Entry
6000056 CDS
T05761
Symbol
rpoA, MaesCp054
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6000056 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
6000056 (rpoA)
03400 DNA repair and recombination proteins [BR:
mesc03400
]
6000056 (rpoA)
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
6000056 (rpoA)
Transcription machinery [BR:
mesc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
6000056 (rpoA)
DNA repair and recombination proteins [BR:
mesc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
6000056 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
SAM_EPH
Motif
Other DBs
NCBI-GeneID:
6000056
NCBI-ProteinID:
YP_001718469
UniProt:
B1NWI2
LinkDB
All DBs
Position
Pltd:complement(82862..83893)
Genome browser
AA seq
343 aa
AA seq
DB search
MVREKITISTRTLQWKCIESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD
IILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMP
VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLH
LEIEKNQHKVTLPLFCFHDKLTKLRKNKKEIVLKYIFIDQSELTPKIYNCLKRSNIHTLS
DLLNKSQEDLMKIEHFRIDDVKHILGILEIEKHFTIDLPKNKI
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggttcgagagaaaataacaatatccactcggacactgcagtggaaatgtattgaatca
agaaccgataataaacgtctttattatggacgctttattctgtctccacttatgaaagga
caagccgacacaataggcattgcgatgcgaagagctttgcttggagaaatagaaggaaca
tgtatcacacgtgcaaaatctgagaaaataccacacgaattttctactatagcaggtatt
caagaatcaatacatgaaattttaatgaatttgaaagaaattgtattaagaagcaatttg
tatggaacttgtgacgcatccatttgtgtcaagggtcctggatatgtaactgctcaagac
atcatcttaccgccttttgtggaaatcattgataatacacagcatatcgctagcctaacg
aaagcaattgatttgtgtattggattacaaatcgagaggaatcgtggctatcgtataaaa
ccaacaaataactttcaagttcaagacgggagttattctatagatgctgtattcatgcct
gttcgaaatgcgaatcatagtgttcattcttatggaaatgggaatgaaaagcaagagata
ctttttctcgaaatatggacaaatggaagtttaactcctaaagaagcacttcacgaagcc
tcccgtaatttgattgatttttttattccttttctacatgcagaagaagaaaacttacat
ttagaaatagaaaaaaatcaacacaaggttactttaccccttttttgttttcatgataaa
ttgactaaattaagaaaaaataaaaaagaaatagtattgaaatacatttttattgaccaa
tcagaattgactcctaagatctataattgcctcaaaagatccaatatacatacattatcg
gatcttttgaataagagtcaagaagatcttatgaaaattgaacattttcgcatagacgat
gtaaaacatatattgggtattctagaaatagaaaaacatttcacaattgatttaccaaag
aataaaatataa
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