Mesorhizobium sp. PAMC28654: LGH82_00200
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Entry
LGH82_00200 CDS
T10450
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mesi Mesorhizobium sp. PAMC28654
Pathway
mesi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGH82_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesi03019
]
LGH82_00200
Messenger RNA biogenesis [BR:
mesi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGH82_00200
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UDL89876
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Position
40697..42367
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AA seq
556 aa
AA seq
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MAKAENAELVFVPLGGVGEIGMNFALYGYGPANAREWIVIDVGVTFPDASLPGVDLVLPD
TRFIEENLANLRGIIITHAHEDHYGALLDTWPKLKAPVWMTPFSAGLLEAKRQGEQGAPK
IPVTIYKAGETFTVGPFQIEAIPVAHSIPEPMSLAITTPLGTVIHTGDWKIDPEPTIGPK
TDEARFRAYGDKGVLALICDSTNALREGESPSEVAVGEGLKGVIQSAKGRVAVTTFSSNV
GRIVSIARAARDAGRQCLVLGRSLKRVIDVAGELGYMDGLPEFIGEEDYGFIPRENLVII
CTGSQGEPLAALAKLSREEMKSVSLTAGDTVVFSSRTIPGNEKAILEIKNRLIDLGIKII
EDGDALVHVSGHPRRSELRKMYEWVRPRIGVPVHGEAAHLVAQGSLMSMSGIGQVAQVRD
GDMLRLAPGAATIIDQVPFGRVYKDGRLIGTDQAMGIRDRRKLSFAGHVAVNVVLDDKYE
LAGDPDLVAIGVAEADGRGETLEDLMIDAAVGAVDSIPRQRRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcggaaaacgctgaactcgtcttcgtaccgctcggcggcgtcggcgagatc
ggcatgaacttcgcgctctatggctacggtccggctaatgcgcgcgaatggattgttatc
gatgtcggcgtcacctttcccgatgccagcctgcccggcgtcgacctggtgctgcccgac
acgcgcttcatcgaggagaacctcgccaatctgcgcggcatcatcatcacccacgcgcat
gaagaccattacggtgcgctgctcgacacctggccgaagctgaaggcgccggtctggatg
acgccattcagcgccggcttgctggaagcaaaacggcagggcgagcagggcgcgccaaaa
atcccggtgacgatctacaaggcgggcgagacattcaccgtcggcccgttccagatcgag
gctattcccgtcgcgcattcgatcccggaaccaatgtcgctggccatcaccacgccgctc
ggcaccgtcatccacaccggcgactggaagatcgatccggaaccgacgattggacccaag
accgacgaggcgcgttttcgcgcgtatggcgacaagggtgtcttggcgctgatctgcgat
tcgaccaatgcgctgcgggaaggggagtctccttccgaagtggccgttggagaaggcctc
aagggcgtcatccagagcgccaagggccgcgtcgcggtcaccacgttctcctccaatgtc
ggacgtatcgtttccatcgccagggcggctcgcgatgccggccgccagtgcctggtgctg
gggcgctccctgaagcgcgtcatcgatgtggccggcgaactcggctacatggacggcctg
ccggaattcatcggcgaggaggactacggcttcatcccgcgcgagaacctggtcatcatc
tgcacaggcagccagggcgagccgctggccgcactagccaaactgtcgcgcgaagagatg
aaatccgtgtcgctgacggccggcgacaccgtggtgttttcctcgcgcaccattcccggc
aacgagaaggcgatcctcgagatcaagaaccggctcatcgacctcggcatcaagatcatc
gaggatggcgatgcgctggtgcatgtttccggccatccgcgccgcagcgaattgcgcaag
atgtatgaatgggtgcgcccgcggatcggcgtccccgtccatggcgaggcagcgcatctg
gtggcgcagggatcgctgatgtcgatgtccggcatcggccaggtggcgcaggtgcgcgac
ggcgacatgctgcggcttgccccgggcgccgccaccattatcgaccaggtgccgttcggc
cgcgtctacaaggacggcaggctgatcggcaccgaccaggccatgggcattcgcgatagg
cgcaagctgtcctttgccggccacgtcgccgtcaatgtcgtgctcgacgacaagtatgag
ctggccggcgaccccgatctggtcgctatcggtgtcgccgaggccgacggccgcggcgag
acgctggaagacctgatgatcgatgcggcggtcggcgcggtggactccattccccgtcag
cgccgaaaagacctcgacctggtgcaggaggcagtgcgccgcgccgtgcgaggcgctgcc
aacgaagcctggggcaagaagccgctggtgacagtgttcgtcacacggtga
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