Mesorhizobium sp. PAMC28654: LGH82_20080
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Entry
LGH82_20080 CDS
T10450
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mesi Mesorhizobium sp. PAMC28654
Pathway
mesi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGH82_20080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesi03019
]
LGH82_20080
03009 Ribosome biogenesis [BR:
mesi03009
]
LGH82_20080
Enzymes [BR:
mesi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGH82_20080
Messenger RNA biogenesis [BR:
mesi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGH82_20080
Ribosome biogenesis [BR:
mesi03009
]
Prokaryotic type
rRNA helicases
LGH82_20080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDL87483
LinkDB
All DBs
Position
complement(4107012..4108880)
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AA seq
622 aa
AA seq
DB search
MINIDGIVPALAKALEKRGYSELTPVQKAVLAPELGQADALVSAQTGSGKTVAFGLALAP
TLLDGAERFSQAAAPLALAVAPTRELALQVTRELEWLYEMTGATVASCVGGMDMRSERRV
LERGAHIVVGTPGRLRDHITRHSLDMSALRAVVLDEADEMLDLGFREDLEFILDAAPAAR
RTLMFSATVPRSIATLAQGYQRNAVRISAGGEEKQHLDIEYRALSVAHPDRENAIINVLR
YYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA
TDVAARGIDLPNLELVVHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNSARKRTERLL
QNAGLKATWAAPPSADDVLRRDDERILADPTLSEPLKDDERGFVGELIERHGAEQVAAAF
VRLCRASRSAPEDLMDVAPFTPSREKLAGEKFAHRDEAPSRRDDFGDSVWFSVSVGRRQN
AEPRWLIPMLCRTGGISKREIGAIKMQQEETFVQIAADWADRFLAAIGPDRKLQDNIRVK
RLEGTPDLSRAGYQPPQPDKKPHRGKRPFDQNAPKPKFEKRAPSADPRPAAASEATPWAK
PGKPKFDKAGPPKHKKPRKRPE
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacattgatggcattgtcccagcgctggcaaaagcgctggaaaaacgcggctat
tccgaactgacgccagtccagaaggctgttctggctcctgaactcgggcaagccgacgcg
ctggtttcagcgcagaccggctccggcaagacggtggccttcggccttgcgctggcgccg
acccttctcgacggcgcggagcgcttctcccaggccgccgcacccctggcgctggccgtg
gcaccgacccgcgagcttgccctgcaggtgacgcgcgaactggaatggctctatgagatg
accggcgccaccgtggcgtcctgcgtcggcggcatggacatgcgcagcgaacggcgcgtg
ctggagcgcggcgcccatattgtcgtcggcacacccggccgcctgcgcgaccacatcacg
cggcactcgctggacatgtcggcgctgagggcggtcgtcctcgacgaggccgacgagatg
ctcgatctcggctttcgcgaagacctcgaattcatcctggacgcggcaccggccgcgcgc
cgcactctgatgttctcggccaccgtgccgcgctccatcgccacgctggcccagggctac
cagcgcaatgccgtgcgcatttcggccggcggcgaggaaaagcagcatctcgacatcgag
tatcgagcgctgagcgtcgcgcaccccgatcgcgagaacgccatcatcaacgtgctgcgc
tactacgaagccaagaacgcgctggtgttctgcaacacgcgtgccgccgtcaaccatctg
accgcgcgcttcaacaaccgtaacttctctgtggtcgcgctctcgggcgagcttagccag
aacgagcgcagccatgcgctgcaggcgatgcgcgacggccgcgccaaggtctgcatcgcc
accgatgtcgcggcgcgcggcatcgacctgcccaatctcgaactcgtcgttcatgccgat
ctgccgaccaatccggagacgcttctgcatcgcagcggacgaaccggacgcgccggacgc
aagggcgtcagtgcgctgatcgtgcccaacagcgcccgcaagcgcaccgagcgccttctg
cagaacgccggtctcaaggcgacgtgggccgccccgccttcggccgacgacgtgctgcgc
cgcgacgacgagcgcatcctcgccgatccgaccctcagcgaacccttgaaggatgatgag
cgcggttttgtcggcgagcttatcgaacggcacggcgccgaacaggtggcggcggccttc
gtgcggctgtgccgtgccagccgctcggcacccgaggacctcatggatgtcgcgccgttc
acgccttcgcgtgagaaactggcaggcgaaaaattcgcgcatcgcgacgaggcgccaagc
cgccgtgacgatttcggcgacagcgtctggttctcggtctcggtgggacgcaggcagaat
gccgaaccgcgctggctgatcccgatgctgtgccgcaccggcggcatcagcaagcgcgag
atcggcgccatcaagatgcagcaggaagaaaccttcgtgcagatcgccgctgactgggcc
gaccggttccttgccgcgatcggtcccgaccgcaagctgcaggacaacatcagggtcaag
cggctggaaggcacgcccgatctgtcgagagcgggctatcagccgccacagccggacaag
aagccgcatcgcggcaagcggccgtttgaccagaacgccccaaagccgaagttcgagaag
cgcgctccgtcggccgacccgcgccccgccgccgccagcgaggcaacaccttgggcaaaa
ccgggcaagccgaaattcgacaaggccggaccgccaaagcacaagaagccgaggaagcgg
ccggagtga
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