Mesorhizobium sp. J8: MJ8_32110
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Entry
MJ8_32110 CDS
T10402
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mesj Mesorhizobium sp. J8
Pathway
mesj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJ8_32110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesj03019
]
MJ8_32110
03009 Ribosome biogenesis [BR:
mesj03009
]
MJ8_32110
Enzymes [BR:
mesj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MJ8_32110
Messenger RNA biogenesis [BR:
mesj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJ8_32110
Ribosome biogenesis [BR:
mesj03009
]
Prokaryotic type
rRNA processing factors
MJ8_32110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCM19437
LinkDB
All DBs
Position
complement(3376420..3379383)
Genome browser
AA seq
987 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEDDEEAENGEEQQARDRGGRR
NRRRGGKNRDRGEHKHEAEVAASPESGESPAEAVAAEETAAEDAGVETAEAEKAETVSEA
VEAASETAEEPAAETGGDTVAADDAVGDEDGKPSEGGPTSMAASVDADVISEAVPQADQP
EQSGEAAASDNDRGMLEDVSSSHSDEHEVESVGAEDALEEIRNRRKPVRRQYKIQEVIKR
RQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAQDRKRLKEVV
ADLEVPQGMGVILRTAGESRTKAEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIK
RSVRDLYNKDIDEILVSGEDGYREAKDFMRMLMPSHAKVVQPYRDTTPIFVRNGIEAQLD
RMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTKEHSIEETALHTNLEAAEEVARQLRL
RDLAGLIVIDFIDMEENRNNRAVEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASV
LESTMKPCPHCGGTGHVRSDSSVALMVVRAIEEFLLKDSRSHIIVRTPAATALYVLNHKR
ANLVDLEARFGLTITIEADETLGTQHYAIFRGAIAEKPEGFVEVRSLPAYTEPEEPEDEI
VVEEEEEEVSVQAEQPRHPQQQGQHQQRSEEGEGRRRRKRRRRRGGRDRDREHTGEVVAA
PAPEEAGEAGDEATEEAAQEVTAGGEAVAATTEEGLAKKRRRGKRGGKRNRREDEASEAA
AGETVGDTEDEAAEGEETAGEPVVAAAPEQPAAPAAANDDAETAEKPKKPRRSRAKKATE
ETVAETVSEPMAEAQVVPVAVEPEPEPAAAAPATAEAEPAANAHPTRRKPQSIDAPVVPV
VSSNVSDEAKAEDKPKRAGWWQRKGFF
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctgatagacgcctcccacccggaggaaacacgcgttgtcgtcgtt
cgcggtaaccgcatcgaagaattcgactttgaatcccaggacaagaagcagctcaaagga
aacatctacctcgcccgcgtaacccgcgtcgaaccttccctccaggcagcctttgtcgag
tatggcggcaaccgtcacggtttcctcgccttcagtgaaatccatcccgattactaccag
atcccggtcgccgaccgtcaggctctcctgcgcgccgaagcgcaggaggccgaggacgaa
gacgacgaggaagccgagaacggcgaagagcagcaggcgcgcgatcgcggtggccggcgg
aaccggcgtcgcggcggcaagaaccgcgaccgcggcgagcacaagcacgaggccgaggtc
gctgcctccccggaaagcggggaaagccctgctgaggccgtagcagccgaggaaaccgct
gccgaggatgccggcgtcgagaccgcagaggctgaaaaggccgaaacggtctccgaggcc
gtcgaggccgcgtcggaaacggctgaagagcctgccgccgagactggcggcgacaccgta
gcagccgacgatgccgtgggcgacgaagacggcaagccgtccgaaggcggccccacatcg
atggcagcgagcgtcgacgcggacgtgatttccgaagccgtcccgcaagccgaccagccc
gaacagagcggcgaagccgccgcgagcgacaatgatcgcggcatgctggaggatgtctcg
tcctcgcattcggacgagcacgaggtcgaatcggtcggcgccgaagacgcgctcgaggag
atccgcaaccgccgcaagccggtgcgtcgccagtacaagatccaggaagtcatcaagcgc
cgccagatccttttggtgcaggttgtcaaggaagagcgcggcaacaagggcgcggcgctg
accacctacctttcgcttgccggccgctattcggtgctgatgcccaacacggcgcgcggc
ggcggcatctcgcgcaagatcaccaacgcgcaggaccgcaagcgcctcaaggaggtcgtc
gccgacctcgaagtgccgcaaggcatgggcgtgatcctgcgcactgccggcgaaagccgc
accaaggccgagatcaagcgcgactacgaatatctgatgcggctgtgggagaacgtccgc
aaccttacgctgcagtccacggcccctgccctggtctatgaggaaggcagcctgatcaag
cgctcggtgcgcgacctctacaacaaggatatcgacgagatcctggtctccggcgaggac
ggctaccgcgaggccaaggatttcatgcgcatgctgatgccgagccacgccaaggtggtt
cagccttaccgtgacaccacgccgatcttcgtgcgcaacggcatcgaggcgcagctcgac
cgcatgctgcagccgcaggtgacgctgaagagcggcggctacatcatcatcaaccagacc
gaagcgctggtttcgatcgacgtcaactccggccgctccacaaaggagcattcgatcgag
gagaccgcgctccacaccaatctggaagcggccgaggaagtcgcccgccagctcaggctg
cgcgaccttgccggcctcatcgtcatcgacttcatcgacatggaggagaaccgcaacaac
cgcgcggtcgagaagcggctgaaggatcacctcaagaacgaccgcgcgcgtatccaggtc
gggcgcatctcgcatttcggcctgatggagatgtcgcgccagcgcatccgcgccagcgtg
ctggaatcgaccatgaagccctgcccgcattgcggcggcaccggccatgtgcgctccgat
tcctccgtggcgctgatggtggtgcgggcgatcgaggaattcctgctcaaggattctcgc
agccacatcatcgtgcgcacgccggccgcgaccgcgctctatgtgctcaaccacaagcgc
gccaatctggtggatctcgaagcgcgtttcggcctcaccatcacgatcgaggccgacgag
acgctcggcacccagcattacgcgatcttccgcggcgccattgccgagaagccggagggc
tttgtcgaggtgcgcagcctgccggcctatactgagccggaggagcccgaggacgagatc
gtcgtcgaggaagaggaagaagaggtttcggtacaggccgaacagccgcgccaccctcag
cagcagggccagcaccagcagcgctccgaagaaggcgaaggccgcaggcgccgcaagcgc
cgccggcggcgcggtggccgggatcgcgaccgcgagcacactggtgaagtcgttgctgct
ccggcgccggaggaagccggcgaagccggtgacgaggcaacggaagaggcagcccaggag
gtcaccgccggcggcgaggccgtggcggcgacaaccgaggaaggcttggccaagaagcgt
cggcgcggcaagcgcggcggcaagcgcaatcgccgcgaggacgaagcttcggaggccgct
gccggcgagactgtcggcgacactgaagacgaagcggcggaaggtgaggaaactgccggc
gagccggtggtggcggccgcgcccgagcagcctgccgctcccgccgccgccaatgacgat
gccgagacggcagaaaagccgaagaagccgcgccgctccagagccaaaaaggccaccgag
gaaaccgtggccgagacggtgtcggagcctatggcggaagcccaggtcgtgcccgtggct
gtcgagcccgagccggagccggcggctgccgctcccgcgacggccgaggcggagcctgcc
gccaacgcgcatccgacgcggcgcaagccgcagtcgatcgacgcgccggtcgttcctgtc
gtgtcctcgaacgtgtccgacgaggccaaggccgaggacaagccgaagcgcgccggctgg
tggcagcgcaagggtttcttctaa
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