Mesorhizobium sp. J8: MJ8_49220
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Entry
MJ8_49220 CDS
T10402
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mesj Mesorhizobium sp. J8
Pathway
mesj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mesj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MJ8_49220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesj03021
]
MJ8_49220
Transcription machinery [BR:
mesj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MJ8_49220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
Sec8_N
Imm3
DUF4351
Motif
Other DBs
NCBI-ProteinID:
BCM21130
LinkDB
All DBs
Position
complement(5168991..5171021)
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AA seq
676 aa
AA seq
DB search
MATKEKEEVETEREGATDGPLLDLSDDAVKKMIKAAKKRGYVTLDELNAVLPSEETDPDR
IEDINAMLNDMGINVVEDDEQGEESEGEAAADSEEDANELAEQTGTAVAATTTKKEPTDR
TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNE
SKILLREIIDLEATYAGPEAKQAPVVERVEEAPSKPEEKPRGRAAAREEEDDITNVGGDT
RGLEEEDDDEDEASLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAGTL
SPSQDRRLKELKDQLIKAVKSLSLNAARIEALVEQLYDINKRLVQNEGKLLRLAESYGVR
REEFLKEYQGSELDPNWTRSIANLTSRGWKEFTKNEKDTIKELRAEIQNLATETAISIQE
FRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGRE
PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQ
ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKLRSFLDS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaggaaaaggaagaggtcgagaccgaacgcgaaggcgccaccgatggccct
ctgctcgacctttccgacgatgctgtcaagaagatgatcaaagccgcgaagaaacgcggc
tatgtcacgctcgacgaactcaatgcggtgctgccctcggaagagaccgatccggaccgc
atcgaagacatcaatgcgatgctcaacgacatgggcatcaatgtcgtcgaggacgacgag
cagggtgaagagagcgaaggcgaagcggcggccgacagcgaggaagacgccaacgagctt
gccgaacagaccggcaccgccgtcgcggccacgaccaccaagaaagagccgaccgaccgc
accgacgacccggtgcgcatgtatctgcgcgagatgggctcggtcgagcttctgtcgcgc
gagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagaccatgattgccggc
ctgtgcgaaagcccgctgaccttccaggccatcatcatctggcgcgacgagctcaacgaa
tcgaagatcctgctgcgcgagatcatcgacctcgaggcgacctatgccggtcccgaggcc
aagcaggcgccggtggtcgaacgcgtcgaggaagcgccgtccaagcccgaagagaagcca
cgcggccgcgcggcggcacgcgaggaagaagacgacatcaccaatgtcggcggcgacacg
cgcgggcttgaggaagaggacgacgacgaggacgaggcaagcctgtcgctcgccgcgatg
gaagcggaacttcgtccgcaggtgatggagacactcgacgtcatcgccgacacctacaag
aagctccgcaagctgcaggaccagcaggtcgagaatcgcctggccgcggccggcactctc
tcgcccagccaggaccggaggctcaaggagctgaaggaccagctgatcaaggcggtgaag
tcgctgtcgctcaacgccgcacgcatcgaagcgctggtggagcagctctacgacatcaac
aagcgcctggtgcagaacgagggcaagcttctgcggctggccgagagctatggcgtgcgc
cgcgaggaattcctcaaggaatatcagggctccgagctcgacccgaactggacccgctcg
atcgcgaatctcacctcgcgcggctggaaggaattcaccaagaacgagaaggacacgatc
aaggagctgcgcgccgagatccagaatcttgccaccgaaacggcgatctcgatccaggaa
ttccgcaagatcgtcaaccaggtgcagaaaggcgagcgcgaggccgcgatcgccaagaag
gagatggtcgaggcgaacctgcgcctcgtcatctccatcgccaagaaatacaccaatcgc
ggcctgcagttcctggatctcatccaggaaggcaatatcggcctgatgaaggcggtcgac
aaattcgagtaccgtcgcggctacaagttctcgacctacgcgacctggtggatccggcag
gccatcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagatcgtgcgcacctcgcgccagatgctgcacgagatcggccgcgag
ccgacgcctgaggaactggccgagaagctcgccatgccgctggaaaaggtgcgcaaggtc
ctgaagatcgccaaggagccgatctcgctcgaaacccccgtgggcgacgaggaggattcg
catctcggagacttcatcgaggacaagatggcgatcctgcccatcgacgcggcgatccag
gccaatctgcgcgagacgacgacgcgcgtgctggcctcgctgacgccgcgcgaggaacgt
gttctcagaatgcgtttcggcatcggcatgaacaccgaccacacgctggaagaggtcggc
cagcagttctcggtcacccgcgaacgcatccgccagatcgaggcgaaggcgctgcgcaag
ctcaagcatccgagccggtcgcgtaagctcagaagcttcctcgacagctga
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