Methanoregula sp. SKADARSKE-2: METHP_00040 Help Entry METHP_00040       CDS       T09978                                  Name (GenBank) VCP-like ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism mesk  Methanoregula sp. SKADARSKE-2 Pathway mesk04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:mesk00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     METHP_00040  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mesk03019]     METHP_00040    03009 Ribosome biogenesis [BR:mesk03009]     METHP_00040    04131 Membrane trafficking [BR:mesk04131]     METHP_00040   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:mesk04147]     METHP_00040 Messenger RNA biogenesis [BR:mesk03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      METHP_00040 Ribosome biogenesis [BR:mesk03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     METHP_00040 Membrane trafficking [BR:mesk04131]  SNARE   SNARE associated proteins    Others     METHP_00040  Autophagy   Aggrephagy    Other aggrephagy associated proteins     METHP_00040 Exosome [BR:mesk04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    METHP_00040 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA AAA_lid_3 CDC48_N CDC48_2 RuvB_N AAA_16 AAA_2 TIP49 AAA_22 AAA_5 AAA_14 AAA_33 AAA_28 nSTAND3 RNA_helicase AAA_7 Mg_chelatase Parvo_NS1 NPHP3_N AAA_18 IstB_IS21 Sigma54_activat AAA_24 DUF815 ABC_tran AAA_3 Zeta_toxin AAA_17 NB-ARC TsaE PhoH ATPase_2 AAA_lid_PRS2_C AAA_19 bpMoxR ATPase SLFN-g3_helicase DUF5906 Bac_DnaA Motif Other DBs NCBI-ProteinID:  WML66602 UniProt:  A0AA51QR42 LinkDB All DBs Position complement(37679..40060) Genome browser AA seq 793 aa AA seqDB search MTEKDSFDVTVKEAAHDDAGRGIARLSIEVMKKLGLVSGDVIEIQGKKKAAAIVWPGFSQ DTGSGVLRIDGNIRGNAGTGIDEKVRIRRIEAEYARKVVIQPTQPIRLVGGEQYLARVLR GRSVIEGQTVRVDVIGNAITLVIAKVTPKGIAIVTDDTEIELKEEPYKPEEGKKEVSEIH YEDIGGLGRELQLVREMIELPLRHPEIFERLGIQPPKGVLLYGPPGTGKTLIAKAVANEV DAHFITLSGPEIMSKYYGESEKGLREKFEEAEQNAPAIIFIDEIDAIAPKRAEVQGEVER RVVAQLLSLMDGLKGRGQVIVIAATNLPDSIDPALRRGGRFDREIEVGIPDKKGRLEIFQ VHSRGVPLADDVKIEEFANNTHGFVGADIALLVKEAAMHALRKIIPQIKIDEEIPNEVLD QLRVTNADFAEARKHVEPSAMREVLVEVPDVTWKQVGGLDDVKQELREAVEWPLKYPDVF ERLRTKPPKGILLFGPPGTGKTLLAKAVANESECNFIAIKGPELLSKWVGESEKGVREIF RKARQASPSIIFFDEIDALVPKRGSFQGSSHVTESVVSQILTELDGMEELKNVTILAATN RPDMLDDALLRPGRLERHIYVPAPDEESRKKIFEVYLGGETGSILAKDVDVDELVKRTEG YAGADIESLVREAKMAAMREFILTMGDRDEKDRIDAIKNVMLTKAHFDAALLKVKGSLDR ESIEKSERQAWEMLHNQEQREILGKAADEISHAGVLHKAEKEAVELRTALYKRKKDFAGI AKLTESLETAMKN NT seq 2382 nt NT seq  +upstreamnt  +downstreamnt atgacagagaaggattcattcgatgtaacggtaaaggaagcggcacacgacgatgcgggg cgcgggatagcccgcctctccattgaggtgatgaagaagctcgggctggtctccggggat gtaattgagatccaggggaagaagaaggcggcggccattgtatggcccggcttctcccag gataccggttccggtgtcctgcggatcgacgggaacatacgggggaacgccgggaccggt atcgacgagaaggtgaggatccggaggatcgaggccgagtacgcccggaaggtggttatc cagccaacccagccgatccggctcgttggtggcgagcagtacctcgcccgggtcctgcgg ggaagatcggtgatcgaaggccagaccgtcagggtcgacgtgatcggaaatgccattact ctcgttattgcaaaggtaacccctaagggtatcgccatcgtcactgatgacaccgagatc gagctcaaggaagagccgtacaagcccgaggaaggcaagaaggaggtctccgagatccat tacgaggatatcgggggccttggccgcgagctccagctcgtccgggagatgatcgagctc ccgctccggcacccggagatcttcgagcggctcggtatccagccgccgaagggtgtcctg ctgtacgggcccccgggaaccgggaagaccttgatcgcaaaggccgtggcaaatgaggtc gatgcgcacttcatcaccctctccggcccggagatcatgagcaagtactacggtgaaagc gagaagggactccgtgagaagttcgaggaggcagagcagaacgcgcccgcgatcatcttt atcgatgagatcgacgcaatcgcacccaagcgtgctgaagtgcagggtgaagtggaacgc agggtcgtagcccagcttctctctctcatggacgggctcaagggcaggggccaggtcatc gttatcgcggcgacaaaccttcccgactcgattgacccggccctccggcgcgggggaagg ttcgatcgcgagatagaagtcggaattcccgataagaaaggccggctggagatcttccag gtccattcccgcggtgtcccgctcgcggatgacgtgaagatcgaggagtttgccaataac acgcacggttttgtcggggctgacatagcgctccttgtcaaggaggcagccatgcatgcg ctgcggaaaattatcccgcagatcaagattgacgaagagatcccaaacgaggttctggac cagctccgggtcacaaacgctgacttcgcagaggcccggaagcatgttgagccgagcgca atgcgtgaggtgcttgtcgaagtaccggatgtaacctggaagcaggtgggcggcctcgat gatgtgaagcaggagctccgcgaggcggtcgagtggccgctcaaataccctgacgtcttc gaacgcctccggacaaaacccccaaaaggcatcctcctcttcggcccgcccggtacgggc aagaccctgcttgcaaaagcggttgcaaacgagagcgagtgcaacttcatcgcgatcaag ggccccgagctcctctccaagtgggtgggggagtcagagaagggtgtccgggagatcttc cggaaggccaggcaggcatcgccctcgatcatcttcttcgatgagatcgatgcgctcgtg cccaagcgcggatccttccaagggtcatcgcatgtgaccgagagtgtggtgagccagatc ctcaccgagctggacgggatggaggagctcaagaatgtcaccatcctcgctgcaacgaac cggccggacatgctcgacgatgcgctgctccgcccaggcaggctcgagcggcatatctac gtccccgcacctgacgaggaaagcaggaagaagatcttcgaggtctacctcggcggcgag accggcagcatccttgcgaaggatgtcgatgtcgatgagctcgtgaagcgtaccgagggc tatgcgggtgccgacatcgaatcgctcgtccgcgaggcaaagatggctgcgatgcgcgag ttcatcctgaccatgggtgaccgggacgagaaggaccggattgatgccatcaagaacgtg atgctgaccaaggcccacttcgatgcggcgctcctcaaggtcaagggctcgctcgaccgc gaatcgatcgagaagtcggagcggcaggcatgggagatgctgcacaatcaggagcagcgg gagattctcggcaaggcggctgacgagatcagccacgctggcgttctgcacaaagcggag aaagaggccgtggaacttcgcaccgcgctctataaacggaagaaggactttgccgggatc gcaaaactgacagagagccttgaaacggcaatgaagaattaa

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