Methanoregula sp. SKADARSKE-2: METHP_00348 Help Entry METHP_00348       CDS       T09978                                  Name (GenBank) Thermosome subunit   KO K04077   chaperonin GroEL [EC:5.6.1.7] Organism mesk  Methanoregula sp. SKADARSKE-2 Pathway mesk03018   RNA degradation Brite KEGG Orthology (KO) [BR:mesk00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     METHP_00348  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mesk03019]     METHP_00348    03110 Chaperones and folding catalysts [BR:mesk03110]     METHP_00348    03029 Mitochondrial biogenesis [BR:mesk03029]     METHP_00348   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:mesk04147]     METHP_00348 Enzymes [BR:mesk01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.1  Enzymes altering polypeptide conformation or assembly     5.6.1.7  chaperonin ATPase      METHP_00348 Messenger RNA biogenesis [BR:mesk03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Chaperones      METHP_00348 Chaperones and folding catalysts [BR:mesk03110]  Heat shock proteins   HSP60 / Chaperonin    METHP_00348 Mitochondrial biogenesis [BR:mesk03029]  Mitochondrial protein import machinery   Matrix    Other matrix factors     METHP_00348 Exosome [BR:mesk04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    METHP_00348   Exosomal proteins of other body fluids (saliva and urine)    METHP_00348   Exosomal proteins of breast cancer cells    METHP_00348   Exosomal proteins of colorectal cancer cells    METHP_00348   Exosomal proteins of bladder cancer cells    METHP_00348 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cpn60_TCP1 NirdL-like_HTH Motif Other DBs NCBI-ProteinID:  WML66882 UniProt:  A0AA51M2Y6 LinkDB All DBs Position 317307..318920 Genome browser AA seq 537 aa AA seqDB search MASSKQLMFDEEARKALLAGVNKVADTVKITLGPKGRYVVIDKISSPIVTNDGVTIAKEI SLHDKFENMGAKLVKEVAQKTQDKTGDGTTTATLLAQAIITEGLKNITSGANPIEIKKGI DAAVSTVVRYIGSMSTPVKDREKIIQVATISANNDEEIGKLISEAMEKVGYGGLISVEDA KSLDTGLDVVKGMQFDQGYISPYMVTDNERMLCEYQDPSILVTDKRISSIKQIIPVLELV AQEGKPLIIIAEDVDGEAQAALILNVIRGALKVCAVKAPGFGDERKALLDDIAILTGATV VSEERGMKLENATKQVFGSAHTVKIDGEKTLIVGGKGEQKAVDDRMSLIQSQINIAESEY KKEDLKKRLAKLSGGVAVIKVGAATETELKEKKMRIDDALNATKAAVEEGVVVGGGITLF RAIDALEELDFVEDRKIGVTIVRRALEEPLRQIAKNAGVEGAEVIARIKDSKDKNFGYNA KTGTYQNLIENGVIDPAKVVRVGLQNAGSISGLVLSTEVIITDFDDEKDKKAATIII NT seq 1614 nt NT seq  +upstreamnt  +downstreamnt atggcgtcatcaaaacagctgatgtttgacgaggaggcgcgcaaagcgctccttgcaggt gtaaacaaagttgcagataccgtgaagattacgctcggccccaagggcaggtatgttgtc attgacaaaatttcgagtccgatcgtgaccaacgacggagtaaccatcgccaaggagatc tcgctccatgacaagtttgagaacatgggtgccaaactcgtcaaggaggttgcccagaag actcaggacaaaaccggcgatggcacaaccaccgcaacgctcctcgcacaggcaattatc acggaaggtctgaagaatatcacttcgggtgcgaaccctattgaaataaaaaagggaatc gatgccgcggtcagtacggtagtccggtatatcggctcaatgagcacacccgtcaaggac cgggagaagattattcaggtcgctacaatatcagccaataacgacgaggaaattggtaaa ctgatctcagaggcaatggagaaggtcgggtatggggggctgatcagtgtcgaagatgca aagagtctcgatactgggcttgacgttgtcaagggaatgcagtttgaccagggatacatc tccccatacatggtcactgataacgagaggatgctttgtgagtatcaggatccctctatc cttgtaacggataagcggatctcttcgataaaacagattatcccggttctcgaactagtt gcccaggagggaaaaccgctaattattatcgcagaggatgtcgacggggaagcgcaggct gcacttatccttaatgtaatccgaggtgccctgaaggtctgtgcggtcaaggctcctggg tttggagacgagcgcaaagctctccttgacgatattgctatcctgaccggcgcgacagtg gtctcggaagagcgggggatgaaactggagaatgccacaaaacaggtttttggatcagct catactgtcaagattgacggggagaagaccctgattgtgggtggaaaaggtgaacaaaag gctgttgatgaccggatgagcctgatccagtcccagatcaacattgctgaatcggaatac aagaaagaggacctgaaaaagaggctcgccaaactgagtggcggtgttgcagtcatcaag gtaggtgcggccactgagaccgaactcaaagagaagaagatgcggattgatgacgcgctc aacgccaccaaggctgcggttgaagaaggcgtcgtcgtaggtggaggcattacactcttc cgggcaattgacgccctggaagaactggactttgtagaggaccggaagatcggcgtcacc atagtccgacgggcactcgaagaaccgctgcggcagattgcaaagaacgctggtgtcgag ggtgctgaagttatcgcacgcatcaaagattctaaagataaaaacttcgggtacaatgcc aagaccggtacctatcagaacctgattgaaaatggtgttattgatccggcaaaggtggtc cgagtggggctccagaatgcgggctcaatatccggccttgttctctcaactgaggttatc atcacggatttcgatgatgagaaggacaagaaggcagcaaccatcattatctga

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