Methanoregula sp. SKADARSKE-2: METHP_01748
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Entry
METHP_01748 CDS
T09978
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mesk
Methanoregula sp. SKADARSKE-2
Pathway
mesk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METHP_01748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesk03019
]
METHP_01748
03009 Ribosome biogenesis [BR:
mesk03009
]
METHP_01748
Enzymes [BR:
mesk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METHP_01748
Messenger RNA biogenesis [BR:
mesk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METHP_01748
Ribosome biogenesis [BR:
mesk03009
]
Prokaryotic type
rRNA helicases
METHP_01748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DTW
Motif
Other DBs
NCBI-ProteinID:
WML68160
UniProt:
A0AA51QSF2
LinkDB
All DBs
Position
complement(1528973..1530580)
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AA seq
535 aa
AA seq
DB search
MNSRIQFSELGLSREIGKAIEDMGFEEPTPIQALAIPLIQTGRDVTAQAQTGTGKTAAFG
IPLIEKIDASLRLPQAIVLCPTRELCIQIAEEFSQLLAHFPRIAVLPVYGGQPIERQLRA
LHSGVQIVIGTPGRVMDHLERKTLRLDNVKMVVLDEADQMLDMGFRDDIELILKKIPQER
QTLLFSATLPQPIIDISKRFQNKPEFVKVQYAELTVPMIEQSYIEVKDRDKLDVLCRLID
LVDPQLAIIFCNTKRRAEELAGKVKARGYRAEELHGDMKQTQRDRVMGGFRKGSIDILIA
TDVAARGIDVDDVDMVINFDVPQDVEYYVHRIGRTGRAGKAGRAVTFITSRDYSKLHEIQ
KYAKIQIPRMPVPSESDVAETRTRATLDKVREIVLAGNMENYLDIIEKETDAELSTIEIA
AALLKMQMEPGTEEKAEKREEIDFGETGAEVGMVRFFLGVGRAHKVQPKDIVGAIAGETG
IPGKAIGAIRILDSYSFVEIPKEHAAEVYSIMKERTIRNQPSGIEPASGKRENYR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaattctcgtatacaattctccgagctcggcctttcgcgcgagatcggaaaagcaata
gaagatatgggctttgaagagcctacacctatccaggcactcgctatccctctcatccag
accggccgtgacgtgactgcccaggcccagaccggcaccggcaagactgcagcatttggt
atcccgctcatcgaaaagattgacgcttctctccggctcccgcaggcaatcgtcctctgc
ccgacccgggagctctgcatccagatcgccgaagagttctctcagctcctcgcccacttc
ccccggatcgcggtgcttcccgtgtacggcgggcagccgatcgagcggcagctgcgtgcc
ctccactccggcgtccagattgtcatcggcacgcccgggcgggtcatggaccacctcgaa
cgaaagaccctccgtctcgacaacgtgaagatggtagtcctcgatgaggccgaccagatg
ctcgacatgggcttccgggacgacatcgagctgatcttaaagaagatcccgcaggagcgg
cagaccctcctcttctcggcaacgctcccgcagccgatcatcgatatctcaaaaaggttc
cagaacaagccggagtttgttaaggtccagtatgcggagctgaccgtcccgatgatcgag
cagtcctatatcgaggtcaaggaccgggacaagctcgacgtcctctgccggctcatcgat
ctcgtcgatcctcagctcgcgatcatcttctgcaacacgaagcgccgggccgaggaactc
gcaggcaaggtcaaggcccgcgggtaccgggctgaggagctccatggggacatgaagcag
acgcagcgcgaccgggtgatgggtgggttccggaagggctcgatcgatatcctgatcgca
accgatgtcgctgcccgcggtatcgatgtcgatgatgtcgatatggtcatcaacttcgat
gtcccccaggatgtcgagtattatgtccaccggatcggccggaccgggcgggccggaaag
gccgggcgggccgtgacctttatcacctcccgcgactactcgaagctccacgagatccag
aagtatgcaaagatccagattccccggatgccggtcccgagcgagagcgatgtcgcggag
acccggacccgggcgacccttgacaaggtccgggagattgtccttgccggcaacatggag
aattacctcgacatcatcgagaaagagactgacgccgagctctccacgatcgagatcgcg
gcagccctcttaaagatgcagatggagcccggcaccgaagagaaagcggagaagcgcgag
gagatcgatttcggcgagaccggtgcggaggtcggcatggttaggttcttccttggcgtg
ggccgtgcccacaaggtccagccgaaagatattgtcggcgcgatcgctggcgagaccggg
attcccgggaaggcaatcggcgcgatccggatcctcgattcgtactcctttgtcgagatc
ccaaaagagcatgctgcagaagtttactctatcatgaaggagcggacgatccggaaccag
ccatctggcatcgagccggcctccgggaaacgggagaattaccggtaa
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