Methylobacter sp. S3L5C: KKZ03_03135
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Entry
KKZ03_03135 CDS
T08037
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mesl
Methylobacter sp. S3L5C
Pathway
mesl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KKZ03_03135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesl03021
]
KKZ03_03135 (rpoC)
03400 DNA repair and recombination proteins [BR:
mesl03400
]
KKZ03_03135 (rpoC)
Enzymes [BR:
mesl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KKZ03_03135 (rpoC)
Transcription machinery [BR:
mesl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KKZ03_03135 (rpoC)
DNA repair and recombination proteins [BR:
mesl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KKZ03_03135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UOA10672
LinkDB
All DBs
Position
complement(634904..639097)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNFLKRQGRADDFDGISIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
VSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSLPSRI
ALLLDMTLREIERVLYFESFVILDSGMTPLEKGQLLTDDEYLDAVDLHGDDFVAKMGAEA
IYDLLKAIDLKDQVNTLREEINSTNSETKIKKYSKRLKVMDALLSSKNRPEWMILKVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLNRLLDLNAPDIIVRNEKRMLQESVD
ALLDNGRRGRAITGTNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEREGAEVWDILEEVIREHPILLN
RAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSIEAQIEARTLM
MATNNILSPANGEPVINPSQDVVLGLYYISREKINAKGDGSIFVSVGEIHKALLAKSVEL
QSKIQLRITEKVINEQGETEDKTHRIHTTVGRALIWEVVPDRMPYDLVNCDMTKKNISRL
INYSYRYLGNKDTVVLADQLMYLGFRYATISGVSFGIEDMAIPAKKVDIIKAADKEVNEI
QSQYASGLVTDGERYNKVVDIWSHANDQVAKVMMDGLGEESVVDAEGNTVKQKSFNSIFM
MAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVITGNDCGTSNGLIMTPIIEGGDVVEPLSERVLGRVA
VDDIMDASGENIIVPAKTLLDEHWVAILEEQSIDQVLVRSIITCENRHGVCAACYGRDLG
RGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSVAISSVQVKSAGIVRLNNLK
SVINREGKLVAVSRSGEVGVVDDYGRERERYKIPYGAVLSVQEGSKINAGDIIVTWDPFT
HPVITEVEGIVELKDFIDGVTVQKQSDEVTGLSSLVVTDPKQRGSAGKELRPMVKLSDSE
GKTIYLPGTEIPAQYFLPAGAIAGIKDGGEVKVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAETSGTISFGKETKGKQRVIITDTVGDLIETLIPKWRHITVFEGEYVE
KGETIAEGELTPHDILRLRGIEELANYLVKEIQDVYRLQGVKINDKHIEAIIRQMLRKVE
ITASGDTGFLKGEQVERAAMRVENDKMESEGKIPASYESILLGITKASLATESFISAASF
QETTRVLTDAAVRGLSDGLQGLKENVIVGRLIPAGTGLAYHENRKNRFSQNQVVESDASV
AVDAGDVEEALKQALNV
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcttaaagcgtcaaggtcgtgctgatgatttcgatggaatcagtattggcttg
gcatcaccagacatgatccgttcctggtcttatggtgaggtaaaaaaacctgaaacaatt
aattatcgtacttttaagcctgaacgtgatggcctattttgcgctaaaatttttggtcca
gtcagtgattatgaatgcctgtgtggtaaatataagcgtctgaagcatcgtggtgttatt
tgtgaaaaatgtggcgtagaagtcacgctatcaaaagttcgccgcgaaagaatggggcat
attgatttagccagtcctgttgcgcatatttggtttttaaaatccttgccctcaagaatt
gcgttgctattagacatgacgctacgcgaaattgagcgggttttatatttcgaatcattc
gttattctagattcaggtatgacccctttagaaaaggggcagttattaactgatgatgag
tatcttgatgctgtagatttacatggcgatgattttgttgccaaaatgggcgcagaagcc
atttatgatttactgaaagctattgacttaaaagatcaggttaatacgcttcgtgaagaa
ataaattcaacaaattcagaaaccaaaattaaaaaatactcaaagcgtcttaaagttatg
gatgcgttattgagttcaaaaaatcgtccagagtggatgattttaaaagtacttccggtg
ttgcctcctgagttacgaccgttggtgccattagatggtggtcgttttgctacttctgat
ttgaatgatttatatcgtcgtgttattaacagaaacaatcgtttgaatcgtttgttggac
ttaaatgctccagatattatcgttcgtaatgaaaagcgtatgttgcaggagtctgtagat
gcgttgttggataatggccgtcggggcagagctattactggaaccaacaggcgtccactg
aaatcattggctgatatgattaagggtaagcaaggacgctttaggcaaaacttgttaggt
aagcgtgtcgattattcaggtcgttcggttattgttgtaggccctacgttaaggttgcac
caatgtggactgcctaaaaaaatggcattagagctgtttaagccgtttatttttagtaaa
ttacaattccgtggtcttgctacaaccattaaagctgcaaagaaaatggtcgaacgagag
ggtgccgaagtatgggatatactggaagaggttattcgtgagcatccgattttattaaat
cgtgcgccaacgttacatcgattgggtattcaggcatttgagcctaccttaattgaaggt
aaggcaattcagctgcatccattagtgtgtagtgcctttaacgcagattttgacggcgat
cagatggctgttcatattccattgtctatagaggcgcagatagaagccagaacattgatg
atggcaactaataatattttatcaccggctaatggtgagcctgttattaacccgtctcaa
gacgtggttttggggctttattacattagtcgtgaaaaaataaacgctaaaggtgatggt
agtatatttgtcagtgttggtgaaattcataaagctttattagctaaatcagtagaattg
caatcaaaaatacaattgcgcattactgaaaaagtgatcaatgagcaaggtgagactgaa
gataagactcacaggatacatactactgttggtcgtgcgttaatttgggaggtagttcct
gatcgtatgccttatgatttagttaattgtgatatgaccaaaaagaacatatcacggtta
ataaattacagttaccgttacttgggcaacaaagacactgtcgtgttggctgaccaattg
atgtatttgggcttcaggtatgcaaccatttccggggtatcgtttggtatagaagacatg
gcgatacctgctaaaaaggttgatattattaaagcggctgataaggaggttaatgaaatt
caaagtcagtatgcctctggtttggttactgatggtgagcgatataataaagttgttgat
atttggtcgcatgctaatgatcaagttgccaaagtaatgatggacgggttaggtgaagag
tctgttgttgatgctgaaggcaatacagtaaaacaaaagtcgtttaattcaatctttatg
atggctgaatctggtgcgcggggttctgctgctcagattcgtcagttagcaggtatgcgg
ggtttgatggcaaaacctgatggttctattattgaaacgccaattactgctaactttaga
gaaggtcttgacgtactgcaatactttatttctactcacggagcgcgtaaaggtcttgct
gatactgctttgaaaacggctaactctgggtatttgacacgacgattggtagatgttgcg
caggatttggttattaccggcaatgattgtggtacttccaatggcttaattatgacaccc
attattgagggtggcgatgtagtcgagccattgtccgagcgcgtactgggtcgggttgct
gttgatgacataatggatgcgtctggggaaaacataatagtacccgccaagactttattg
gatgagcattgggttgcgattcttgaagagcaaagtattgatcaggtattggttcgttcg
attattacatgtgaaaatagacatggagtttgtgctgcttgttatgggcgtgatttaggt
cgtgggcatttggtgaatattggtgaggcagtgggtgtcatagctgcgcaatcgatcggc
gagccaggaactcagctaactatgcgtaccttccatattggtggtgcagcatcaaggtcg
gttgccattagtagcgtacaggtaaagtctgccggcatagtgcgtcttaacaatctaaag
tcagtaattaaccgcgaaggtaagcttgttgcagtatcaagatcaggtgaagtaggtgtg
gtagatgattatggtcgcgaaagagagcgctataaaattccttatggagctgtgctttcg
gttcaagaaggttcaaagattaacgcaggagatattattgtcacttgggatccatttacc
catcctgttattaccgaagttgagggtattgttgagctcaaggattttattgatggcgtg
actgtacagaaacaatctgacgaagttaccggcttgagttcgttggtcgtaaccgatcca
aagcaacgtggttctgcaggtaaagaattacgtccaatggtgaagttatcggatagtgaa
ggcaaaacaatctatttgccaggtactgaaattcctgcgcagtatttcttacctgcaggt
gctattgccggtataaaagatggtggtgaagttaaggttggtgatgtattggcaaggatt
ccccaagaatcaagtaaaaccagagatataactggtggtctgccgcgtgttgccgattta
ttcgaggcccgtaaaactaaggatccggcaattcttgctgaaaccagtggtactatctca
tttggtaaagaaaccaaaggcaagcagcgtgtcattattactgatacagttggcgacctt
attgagacattgataccaaaatggcgtcatatcactgtatttgaaggtgagtatgtagaa
aaaggcgagactattgcggaaggtgaattaacacctcatgacattctcaggttgagaggt
attgaagaattagctaactatctggttaaggaaatccaagacgtttatcgcttacagggt
gtaaagattaatgataagcatattgaagcaatcatacgtcaaatgcttagaaaggttgag
atcacagcatctggtgataccggctttttgaagggtgagcaagttgagcgcgcggcgatg
agagtcgagaatgacaaaatggaaagtgaaggcaagattcctgccagttatgaatctata
ctgttaggtattactaaagcttcgctggcaactgaatcatttatatcggcagcttctttt
caagaaacaacaagagtgctgactgacgcggctgtgcgtgggttgagtgatggtcttcag
gggttaaaagaaaacgttattgtcggtcgattaattcctgctggcacgggtctggcttat
catgaaaacagaaaaaacaggttttctcagaatcaggtggtagaaagtgatgcgtctgtt
gctgttgatgctggagatgtagaagaggctcttaaacaagcattgaacgtttaa
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