Methylobacter sp. S3L5C: KKZ03_10575
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Entry
KKZ03_10575 CDS
T08037
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mesl
Methylobacter sp. S3L5C
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesl03019
]
KKZ03_10575 (hrpA)
Enzymes [BR:
mesl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KKZ03_10575 (hrpA)
Messenger RNA biogenesis [BR:
mesl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KKZ03_10575 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_25
ResIII
NACHT
DUF5121
PhoH
AAA_30
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UOA10627
LinkDB
All DBs
Position
2380845..2384816
Genome browser
AA seq
1323 aa
AA seq
DB search
MPSSDLVKQLTQQLPHCLNQDRHVLKRQLDRLRSETQKGKDPLEQLNTLAGRFEKSVALR
AKRLASIPPLNFPDLPVTGKKDDIAKLIKENQVVIVCGETGSGKTTQLPKICLSIGLGAA
GFIGHTQPRRIAARTVADRIAEELGESIGKSVGYKIRFNDKTHAESLVKLMTDGILLAES
QNDPYLSQYDTIIIDEAHERSLNIDFLLGYLKWLLPKRPDLKVIITSATIDPQRFSTHFN
NAPIIEVSGRTYPVDMRYRPIIPKQEIGNEEDDDQSAGSRLARTALDETSDDLQNAILDA
VDELYRDLRGDILIFLSGEREIRETTDSLKKHHPTQYEILPLYSKLSVSEQERVFKPKGG
KIRIVLATNVAETSLTVPGIRGVIDTGHARISRYSHRSKIQRLPIERISQSSANQRAGRC
GRVAEGICIRLYSHDDYLARPEFTEPEIMRTNLSAVILQMTALNLGEIEDFPFLEPPEDK
MIRDGKNVLHEVNALDKAGKLTDIGKQLAKFPTDPKLARMLIAAAHEHCLTEVAIIVSAL
SVQDPREKPADKMQQADAKHVAFRHPESDFLTVLNIWNTFEEQKKHLSNSKLRKYCSDNF
LSYIRMREWFDIHAQIMQVIKGDLKMHPNTDDAGYEKIHRALLPGLLSNIGFRHESHEYL
GARGLKFFIFPGSGLHKLKPKWIMAAEQVETSKVYARNVARIEPEWIEQCAAHLVKHNYY
DPHWAKKSARCMVSARTLLYGLTLQAGRKIPYDHVDPKAAREIFIRSALVDHDYHSNAPF
YIANQKLLEEVGIIQHKGRRVDLVVDEQWLYKFYDNKLPPEIVSGVTLDTWRKTVERANL
KILFLTKEDLTREEEEDYVNEWDFPDSKKIGNLTLPLQYRFEPGHDEDGVTVIIPVHQLN
QLSQAPFEWLVPGLLEEKCIALIKSLPKQIRKHFVPVPQTVKQCLEIEPDFKGTLQEWLG
NRLRKLTGEAIPLNAWNLDGLTDHLKMNFRVVDDQDKLLDYGRDLKKLQLKYTTKAEHSF
DQIAADELNYTGCIQWAFDDLPETWQFIQKGQNFIGFPAIIDEGDAVGVRIFDTEQKAAL
QHQKGLMRLLKLQLRKECTYIIKNMPQSAAVELTYNRLPKHPILSLLAGENGVASTSYKE
DMLYLILYSVFIDGKSIRTQQAFEQSLQQYKPELIGIGNDAGKTALEIMELYGVIKKCME
RTLHANDPLANDINEQLNLLIYAGFIRNTPYQCLKAIPRYLKAIQYRLDKRDHNLQKTQE
VTRYSVRFWKDIEKKAKKDWVIPEQDPFRWAIEEFRVSLFAQQLKTAYPVSVKRMDKLWD
EHG
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttccgacctagttaaacaactcacccagcaattaccgcactgtcttaatcaa
gacaggcatgttttaaagcgccagttagacaggttacggagtgaaactcagaaaggcaaa
gatccgctagagcaactgaacacgttagccggccgttttgagaaatctgtcgcattaaga
gccaagcgacttgccagtattccacccctgaatttcccggatttacctgtcacaggtaaa
aaagatgacatcgccaaactgatcaaggaaaatcaggtagtgattgtttgcggcgaaacc
ggttccggtaaaaccacccagttacccaaaatttgtttatctataggtctgggtgcagcg
ggttttattggccacacacagcccaggcgaattgctgcacggacggttgctgatcgtatt
gccgaagaactcggtgaatcgataggaaagtcagtgggttataaaattcgttttaatgat
aaaacgcatgcagagtcattggttaaattaatgactgatggtattttgctggcggaatcg
caaaatgatccttacttaagtcaatacgacactatcattattgatgaggcccatgaacgt
agtttaaatatcgactttttattgggttatttaaaatggctgttgccaaaacgtccggat
ttaaaggtaatcattacctcggcaaccatcgatccgcaacgtttctctacccattttaat
aatgcgcctattattgaagtgtcagggcggacttatccggttgatatgcgctatcgtcct
attattcccaaacaggagattgggaacgaggaagacgatgaccaatctgccgggagcaga
ttggcgcgtacagcccttgatgaaactagcgacgatctgcaaaacgcaatactggatgca
gttgatgaactgtatcgggatttacgcggcgatatactcatttttctcagtggtgaacgg
gaaatcagggaaacgactgattctttaaaaaaacaccatcctacgcaatatgaaattttg
ccactatattcaaaactcagtgtcagcgaacaggagcgggtgttcaagcccaaaggtgga
aaaatacgtattgtgttggcaaccaatgtcgccgaaacctcgttaaccgttccaggtatc
cgtggtgtaatcgatacgggtcatgcacgtatcagtcgctatagccatcgcagtaaaatc
cagcgtttaccgattgaacgtatttcgcagtccagtgccaatcaaagggcagggcggtgt
ggtcgtgttgctgaaggaatttgtattcggctatattcgcatgatgactatctggccaga
ccggaatttaccgagccggaaattatgcgtaccaatttgtctgcggttattttgcagatg
acggcattaaatctgggtgaaattgaagatttcccgtttttggaaccccctgaagataaa
atgattcgggatggtaaaaatgtattgcatgaagttaatgctttggataaagctgggaag
ctgaccgacataggcaaacagttagccaaattcccgactgatcccaaattggcgcgtatg
ttgattgcagcagcgcacgagcattgcttaaccgaagtggccattattgtgtcagcgtta
agcgtacaggatccgcgcgaaaaaccggccgataaaatgcagcaagcggatgccaaacat
gtggcatttcgtcatcctgaatctgattttttaacggtactgaatatctggaataccttt
gaagaacagaagaagcatctgtctaatagtaaactacgtaaatattgtagcgataatttt
ctgtcctacatcagaatgcgtgagtggtttgatattcacgcccaaattatgcaggtgatt
aaaggtgatttaaaaatgcacccgaacaccgatgatgccggttatgaaaaaattcatcgc
gccttgttgccgggtttgttatccaatattggttttcggcatgaatctcacgaatatttg
ggcgcacggggtttaaaattttttattttcccaggttccgggctacataaacttaaaccc
aagtggattatggcagcagagcaggttgaaaccagtaaggtttatgcccgtaatgtcgcc
agaattgaacctgaatggatagagcaatgtgcggcgcatttggttaagcataactattat
gacccgcattgggcaaaaaagtcggcgcgatgtatggtgtcggcaagaactttgttatat
ggcttaactttgcaggcagggcgaaagattccttatgatcatgttgatccaaaagctgcc
agagagatttttatccgttcggcgttggttgatcacgattatcacagtaatgcacctttc
tacatcgccaatcaaaagttgctggaagaagttgggattattcagcataaaggccgtcgt
gttgatctggtggttgatgaacagtggctttataaattttacgataacaaactgccgcct
gaaattgttagtggcgttactttggatacctggcgaaaaacagtcgaacgcgctaatctc
aaaatcttgtttttaaccaaggaagatttaacgcgtgaagaagaggaagactatgtcaat
gaatgggattttccagacagcaaaaaaataggtaatttgactctcccgttacaatatcgt
tttgaaccaggacatgatgaagatggcgtaacggtaattatccctgtacatcagttaaat
caactatcgcaagcgccttttgagtggctggtaccgggtttgttggaagaaaaatgtatt
gccttgattaaatccctgcccaagcaaattagaaaacattttgttcctgtgccgcaaacc
gttaagcaatgtctggaaattgaacccgattttaaaggtacattacaggaatggttgggt
aaccggttacgaaaattaacgggcgaagcgattccattaaatgcctggaatttggacggg
ttaaccgaccatttgaaaatgaattttagagtcgttgacgatcaggacaaactgcttgat
tacggtagggatttaaaaaaattacagcttaaatacacgaccaaagccgagcacagtttt
gaccaaatagccgctgatgaactaaattataccggctgtattcaatgggcgtttgatgac
cttcccgagacctggcaatttatccagaagggacaaaattttattggttttccggccatt
attgatgaaggtgatgctgttggtgtgcgtatttttgacacagagcagaaagcggcatta
caacatcaaaagggtttgatgcgcttacttaagttgcaattacgtaaagaatgcacttat
atcatcaaaaatatgccacagtcggcagcagtagaattaacctataatcgtttacccaag
catccaattttatcgttattagcgggtgaaaatggcgtagcaagcacctcgtataaagaa
gatatgttgtatttgattttatacagtgtatttattgacggtaaatccatccggacccaa
caagcatttgagcaaagtttgcaacaatacaagcccgagttgattggtatcggtaatgat
gccggaaaaacagctttggagattatggagctttatggcgtaataaaaaaatgcatggaa
cgaaccctacatgctaatgatcctctggcaaatgatatcaatgagcaattaaacttactc
atttatgcggggtttattcgtaatacaccttatcaatgccttaaagccattcctcgctat
ctaaaagcaatacaatatcgccttgataagcgagatcataatctccaaaaaactcaggaa
gttactcggtattctgtacgtttttggaaggatatcgagaaaaaagctaaaaaagactgg
gttataccagagcaagacccgtttcgttgggccattgaagagttcagggtttcgttgttt
gcccagcaacttaaaactgcttatccggtttccgtaaagcgcatggataagctttgggac
gaacacggataa
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