Methylobacter sp. S3L5C: KKZ03_11210
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Entry
KKZ03_11210 CDS
T08037
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mesl
Methylobacter sp. S3L5C
Pathway
mesl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKZ03_11210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesl03019
]
KKZ03_11210
Enzymes [BR:
mesl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KKZ03_11210
Messenger RNA biogenesis [BR:
mesl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKZ03_11210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UOA06915
LinkDB
All DBs
Position
2521844..2523103
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AA seq
419 aa
AA seq
DB search
MPFSKLGLSDPLLRAIADAGYLTPSPIQLQAIPAVLNGHDLLAAAQTGTGKTAGFALPIL
HRLSQHAYGPNRPIRVLILTPTRELAAQVGESVNKYGVHLHPRLKTEVVFGGVKINPQMM
RLRGGVDVLVATPGRLLDLVNQNAVKLDKVETLVLDEADRMLDMGFIRDIRKLIALLPKK
RQNLLFSATFSEDIRKLTTGLLVNPIKIEVAARNTAAETVEQIAYLCNKANKTELLCHLI
KTNNWQQVLVFTSTKHGANRLTEKLNKIDIKAAAIHGNKSQGARTSALSGFKAGEIRVLV
ATDVAARGIDIALLPHVVNYELPRAPADYVHRIGRTGRAGIEGQAISLVSHDERDALRMV
EKLIGAPIKREQIVGFEPADVAPPMPPEPPRAPRPPRNSNQARKPSGNSNNRPRSRSSV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgccattttcaaaactcggtttatcagatccacttttacgtgctattgctgatgccggt
tacttaactccatctcctattcaattacaggccattcctgccgtattaaacggtcatgat
ttgcttgctgccgcgcaaacaggtaccggtaaaacagctggctttgctttaccgattttg
catcgtttatcacaacatgcctacggtcccaatcgtccgatcagagtattaatattaacg
ccaacccgcgaacttgctgcccaagtcggtgaatcagtcaacaaatatggtgtgcattta
cacccacgattaaaaactgaagtggtatttggcggggtaaaaatcaatccacagatgatg
cgcttaagaggcggcgttgatgtgctggtagcgactccgggtcgtttactggatttggtt
aatcaaaatgcagttaagctggataaagtagaaacattggttctggatgaggcagatcga
atgttggatatgggttttattcgggatattcgtaaactaattgctttgctgccaaaaaaa
cgccaaaacctgttgttttcagcaactttttctgaagatatacgtaagcttacaacgggc
ttgttagttaatccgataaaaattgaagtggccgctcgtaacactgcagcagaaaccgtc
gagcaaattgcttatctctgtaataaagctaataaaaccgaactgctttgccatttgata
aaaaccaataattggcaacaagttttggtatttaccagtaccaagcatggtgccaaccga
ctgactgaaaaactcaacaaaattgatataaaagcggctgccattcatggtaataaaagc
cagggtgcaagaaccagtgccttgtcaggttttaaagccggcgagatcagagtattggtt
gctaccgatgtggcggcgcgaggtattgatattgccttgcttccgcatgttgtcaattat
gaattgccacgcgctcctgccgattatgtgcatagaattggtcgtaccggcagggcaggt
atagaagggcaagcgatatcgttggtatcgcatgatgagcgtgatgctttgcggatggtt
gaaaaattgattggtgcgccgattaaacgtgagcagattgtcggttttgaaccggccgat
gttgcaccaccgatgcctcctgagcctccacgcgcgcctcggccacccagaaactcaaat
caggcgcgtaaaccttcgggcaattcaaataacaggccccgctcaagaagcagcgtttaa
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